Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CS893_RS01715 Genome accession   NZ_LT635460
Coordinates   343204..344004 (+) Length   266 a.a.
NCBI ID   WP_089086647.1    Uniprot ID   -
Organism   Helicobacter pylori isolate HE178/09     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 338204..349004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS893_RS01680 pseH 338703..339245 (+) 543 WP_079341521.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  CS893_RS01685 - 339178..340116 (-) 939 WP_089086644.1 tetraacyldisaccharide 4'-kinase -
  CS893_RS01690 - 340113..340895 (-) 783 WP_089086645.1 NAD+ synthase -
  CS893_RS01700 ilvC 341144..342136 (+) 993 WP_089086646.1 ketol-acid reductoisomerase -
  CS893_RS01705 minD 342161..342967 (+) 807 WP_001019079.1 septum site-determining protein MinD -
  CS893_RS01710 minE 342964..343197 (+) 234 WP_033592300.1 cell division topological specificity factor MinE -
  CS893_RS01715 dprA 343204..344004 (+) 801 WP_089086647.1 DNA-processing protein DprA Machinery gene
  CS893_RS01720 dprB 344001..344405 (+) 405 WP_089086648.1 Holliday junction resolvase RuvX Machinery gene
  CS893_RS01725 - 344693..344931 (+) 239 Protein_327 sel1 repeat family protein -
  CS893_RS01730 - 345129..345467 (+) 339 WP_000699880.1 hypothetical protein -
  CS893_RS01735 - 345451..346011 (+) 561 WP_089086649.1 hypothetical protein -
  CS893_RS01740 - 346113..346994 (-) 882 WP_089086650.1 RluA family pseudouridine synthase -
  CS893_RS01745 recJ 346994..348544 (-) 1551 WP_089086651.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29825.74 Da        Isoelectric Point: 8.5952

>NTDB_id=1145720 CS893_RS01715 WP_089086647.1 343204..344004(+) (dprA) [Helicobacter pylori isolate HE178/09]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1145720 CS893_RS01715 WP_089086647.1 343204..344004(+) (dprA) [Helicobacter pylori isolate HE178/09]
ATGAAAAGCCATTTCCAATACAGTGCGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACGAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCCTGATTTTAAGCGAATATGAAAAAGACTTCATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTAGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCTTGAACGAGAGCGACGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGTGCGAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAGCGTATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.992

100

0.97
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment