Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   BQ6063_RS03300 Genome accession   NZ_LT632615
Coordinates   682863..683312 (-) Length   149 a.a.
NCBI ID   WP_072356079.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST23 isolate ST23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 677863..688312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ6063_RS03280 (EUL28_00634) - 678138..678530 (-) 393 WP_010946360.1 hypothetical protein -
  BQ6063_RS03285 (EUL28_00635) - 678667..679044 (+) 378 WP_014841112.1 hypothetical protein -
  BQ6063_RS03290 (EUL28_00636) - 679245..680552 (+) 1308 WP_061784172.1 tetratricopeptide repeat protein -
  BQ6063_RS03295 (EUL28_00637) comEC 680578..682785 (-) 2208 WP_027226346.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BQ6063_RS03300 (EUL28_00638) pilE 682863..683312 (-) 450 WP_072356079.1 type IV pilin protein Machinery gene
  BQ6063_RS03305 (EUL28_00639) - 683324..686833 (-) 3510 WP_061690881.1 pilus assembly protein -
  BQ6063_RS03310 (EUL28_00640) - 686846..687358 (-) 513 WP_010946366.1 pilus assembly protein -

Sequence


Protein


Download         Length: 149 a.a.        Molecular weight: 16310.60 Da        Isoelectric Point: 7.6922

>NTDB_id=1145520 BQ6063_RS03300 WP_072356079.1 682863..683312(-) (pilE) [Legionella pneumophila strain ST23 isolate ST23]
MLSHIHFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1145520 BQ6063_RS03300 WP_072356079.1 682863..683312(-) (pilE) [Legionella pneumophila strain ST23 isolate ST23]
ATGCTCAGTCATATACATTTTATGAAGAATAGCCGTATGAAACAATCCGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGAATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ACGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGTTATTCACAGAATTTTTCCTATGCTGCAGCGTGTGGCGCC
CTACCAGCATTTCCTCAAACAACGCCGAACGGGTACTATACTATCAATATTTCAAACCTGACGGCCACAACGTATACCTT
AACCGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCATGTCAATTAATCAGGCCAATGTAAAAACAG
CTGTAGATTCCTCCGCTAATGCGCAACCAGAATGCTGGAATCCCGGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

99.329

100

0.993

  pilE Legionella pneumophila strain ERS1305867

99.329

100

0.993


Multiple sequence alignment