Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   BT141_RS14275 Genome accession   NZ_LT632614
Coordinates   3120352..3121011 (-) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST62 isolate ST62     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3115352..3126011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT141_RS14260 (H044120014_02834) - 3116224..3116883 (+) 660 WP_011947560.1 hypothetical protein -
  BT141_RS14265 (H044120014_02835) lcl 3117051..3118460 (+) 1410 WP_061563548.1 collagen-like adhesin Lcl -
  BT141_RS14270 (H044120014_02836) uvrC 3118484..3120340 (-) 1857 WP_042754708.1 excinuclease ABC subunit UvrC -
  BT141_RS14275 (H044120014_02837) letA 3120352..3121011 (-) 660 WP_011947563.1 two-component system response regulator LetA Regulator
  BT141_RS14280 (H044120014_02838) phhA 3121136..3121954 (-) 819 WP_015961727.1 phenylalanine 4-monooxygenase -
  BT141_RS14285 (H044120014_02839) - 3122394..3123491 (+) 1098 WP_015961728.1 competence/damage-inducible protein A -
  BT141_RS14290 (H044120014_02840) cgtA 3123450..3124475 (-) 1026 WP_015961729.1 Obg family GTPase CgtA -
  BT141_RS14295 (H044120014_02841) rpmA 3124690..3124968 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  BT141_RS14300 (H044120014_02842) rplU 3124981..3125292 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=1145511 BT141_RS14275 WP_011947563.1 3120352..3121011(-) (letA) [Legionella pneumophila strain ST62 isolate ST62]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1145511 BT141_RS14275 WP_011947563.1 3120352..3121011(-) (letA) [Legionella pneumophila strain ST62 isolate ST62]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1

Multiple sequence alignment