Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BT141_RS12245 Genome accession   NZ_LT632614
Coordinates   2682260..2682964 (+) Length   234 a.a.
NCBI ID   WP_015961431.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST62 isolate ST62     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2677260..2687964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT141_RS12220 (H044120014_02427) - 2678491..2679369 (+) 879 WP_042755104.1 lpg2327 family Dot/Icm T4SS effector -
  BT141_RS12225 (H044120014_02428) lem22 2679634..2680017 (+) 384 WP_014842288.1 Dot/Icm T4SS effector Lem22 -
  BT141_RS12230 (H044120014_02429) - 2680211..2680441 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  BT141_RS12235 (H044120014_02430) - 2680422..2681318 (+) 897 WP_011947174.1 polyprenyl synthetase family protein -
  BT141_RS12240 (H044120014_02431) bioC 2681362..2682216 (-) 855 WP_015961430.1 malonyl-ACP O-methyltransferase BioC -
  BT141_RS12245 (H044120014_02432) comFC 2682260..2682964 (+) 705 WP_015961431.1 ComF family protein Machinery gene
  BT141_RS12250 (H044120014_02433) - 2682993..2684066 (-) 1074 WP_011947177.1 M50 family metallopeptidase -
  BT141_RS12255 (H044120014_02434) - 2684123..2684401 (-) 279 WP_010948040.1 hypothetical protein -
  BT141_RS16475 (H044120014_02435) - 2684419..2684595 (+) 177 WP_169050943.1 hypothetical protein -
  BT141_RS12260 (H044120014_02436) hemA 2684719..2685993 (+) 1275 WP_015444133.1 glutamyl-tRNA reductase -
  BT141_RS12265 (H044120014_02437) prfA 2685977..2687065 (+) 1089 WP_042755102.1 peptide chain release factor 1 -
  BT141_RS12270 (H044120014_02438) prmC 2687058..2687921 (+) 864 WP_027225915.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26744.34 Da        Isoelectric Point: 9.2792

>NTDB_id=1145507 BT141_RS12245 WP_015961431.1 2682260..2682964(+) (comFC) [Legionella pneumophila strain ST62 isolate ST62]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVPPVTYEHVMIVDDLLTTGSTANEIAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1145507 BT141_RS12245 WP_015961431.1 2682260..2682964(+) (comFC) [Legionella pneumophila strain ST62 isolate ST62]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAACTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGTGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCTTTTCTAAAACAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATAGCACATACAT
TAAAAAATGCCGGGGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

100

100

1
  comFC Legionella pneumophila strain ERS1305867

100

83.761

0.838

Multiple sequence alignment