Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BQ3358_RS10760 Genome accession   NZ_LT615218
Coordinates   2115957..2116352 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AUS0325     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2110957..2121352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ3358_RS10735 thiE 2111556..2112197 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  BQ3358_RS10740 thiM 2112199..2112990 (-) 792 WP_069992015.1 hydroxyethylthiazole kinase -
  BQ3358_RS10745 thiD 2112974..2113804 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  BQ3358_RS10750 tenA 2113797..2114486 (-) 690 WP_000396077.1 thiaminase II -
  BQ3358_RS10755 sceD 2114873..2115568 (-) 696 WP_000752004.1 lytic transglycosylase SceD -
  BQ3358_RS10760 ssb 2115957..2116352 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  BQ3358_RS10765 - 2116546..2116986 (+) 441 WP_000846746.1 YwpF-like family protein -
  BQ3358_RS10770 fabZ 2117045..2117485 (-) 441 WP_069992017.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BQ3358_RS10775 murA 2117519..2118784 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BQ3358_RS10780 - 2118895..2119128 (-) 234 WP_064127192.1 DUF1146 family protein -
  BQ3358_RS10785 - 2119260..2119352 (-) 93 WP_001790611.1 hypothetical protein -
  BQ3358_RS10790 - 2119690..2120094 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1145314 BQ3358_RS10760 WP_000932694.1 2115957..2116352(-) (ssb) [Staphylococcus aureus strain AUS0325]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1145314 BQ3358_RS10760 WP_000932694.1 2115957..2116352(-) (ssb) [Staphylococcus aureus strain AUS0325]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment