Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BQ3358_RS08000 Genome accession   NZ_LT615218
Coordinates   1617842..1618528 (-) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AUS0325     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1612842..1623528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ3358_RS07980 rpsT 1613756..1614007 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  BQ3358_RS07985 holA 1614052..1615026 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  BQ3358_RS07990 comEC 1615083..1617284 (-) 2202 WP_025175028.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BQ3358_RS07995 - 1617289..1617750 (-) 462 WP_000439693.1 ComE operon protein 2 -
  BQ3358_RS08000 comEA 1617842..1618528 (-) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  BQ3358_RS08005 - 1618568..1619284 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  BQ3358_RS08010 rsfS 1619287..1619640 (-) 354 WP_001088020.1 ribosome silencing factor -
  BQ3358_RS08015 yqeK 1619641..1620225 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  BQ3358_RS08020 nadD 1620215..1620784 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  BQ3358_RS08025 yhbY 1620787..1621077 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  BQ3358_RS08030 aroE 1621081..1621887 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  BQ3358_RS08035 yqeH 1621901..1623001 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=1145302 BQ3358_RS08000 WP_072353822.1 1617842..1618528(-) (comEA) [Staphylococcus aureus strain AUS0325]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1145302 BQ3358_RS08000 WP_072353822.1 1617842..1618528(-) (comEA) [Staphylococcus aureus strain AUS0325]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978

Multiple sequence alignment