Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   BQ3358_RS07745 Genome accession   NZ_LT615218
Coordinates   1570473..1570970 (-) Length   165 a.a.
NCBI ID   WP_029694050.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AUS0325     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1565473..1575970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ3358_RS07720 gcvPB 1565636..1567108 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  BQ3358_RS07725 gcvPA 1567101..1568447 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  BQ3358_RS07730 gcvT 1568467..1569558 (-) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  BQ3358_RS07735 - 1569717..1570241 (-) 525 WP_001015121.1 shikimate kinase -
  BQ3358_RS07740 - 1570231..1570377 (-) 147 WP_001789879.1 hypothetical protein -
  BQ3358_RS07745 comGF 1570473..1570970 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  BQ3358_RS07750 comGE 1570888..1571187 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  BQ3358_RS07755 comGD 1571174..1571620 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  BQ3358_RS07760 comGC 1571598..1571909 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  BQ3358_RS07765 comGB 1571923..1572993 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  BQ3358_RS07770 comGA 1572965..1573939 (-) 975 WP_000697219.1 competence type IV pilus ATPase ComGA Machinery gene
  BQ3358_RS07775 - 1573991..1574614 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  BQ3358_RS07780 - 1574611..1574940 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  BQ3358_RS07785 - 1574940..1575926 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19199.92 Da        Isoelectric Point: 10.2192

>NTDB_id=1145294 BQ3358_RS07745 WP_029694050.1 1570473..1570970(-) (comGF) [Staphylococcus aureus strain AUS0325]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1145294 BQ3358_RS07745 WP_029694050.1 1570473..1570970(-) (comGF) [Staphylococcus aureus strain AUS0325]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.97

100

0.97
  comGF Staphylococcus aureus N315

96.97

100

0.97

Multiple sequence alignment