Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   BQ3358_RS02485 Genome accession   NZ_LT615218
Coordinates   521174..521743 (+) Length   189 a.a.
NCBI ID   WP_000872881.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AUS0325     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 516174..526743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ3358_RS02460 cysE 517387..518034 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  BQ3358_RS02465 cysS 518018..519418 (+) 1401 WP_069991850.1 cysteine--tRNA ligase -
  BQ3358_RS02470 - 519411..519815 (+) 405 WP_000370185.1 Mini-ribonuclease 3 -
  BQ3358_RS02475 rlmB 519823..520569 (+) 747 WP_000390329.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BQ3358_RS02480 - 520569..521093 (+) 525 WP_000664732.1 NYN domain-containing protein -
  BQ3358_RS02485 sigH 521174..521743 (+) 570 WP_000872881.1 sigma-70 family RNA polymerase sigma factor Regulator
  BQ3358_RS14215 rpmG 521858..522001 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  BQ3358_RS02490 secE 522057..522239 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  BQ3358_RS02495 nusG 522252..522800 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  BQ3358_RS02500 rplK 522981..523403 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  BQ3358_RS02505 rplA 523611..524303 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  BQ3358_RS02510 rplJ 524575..525075 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  BQ3358_RS02515 rplL 525118..525486 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  BQ3358_RS02520 - 525661..526269 (+) 609 WP_000020306.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23096.97 Da        Isoelectric Point: 9.6924

>NTDB_id=1145281 BQ3358_RS02485 WP_000872881.1 521174..521743(+) (sigH) [Staphylococcus aureus strain AUS0325]
MKYDLTTQDSTIKRNNAINDKDFEKLVMNLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1145281 BQ3358_RS02485 WP_000872881.1 521174..521743(+) (sigH) [Staphylococcus aureus strain AUS0325]
TTGAAATATGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGAATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTTATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment