Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | B5474_RS08850 | Genome accession | NZ_LT605059 |
| Coordinates | 1842118..1842498 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain NCTC7364 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1837118..1847498
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B5474_RS08820 (NCTC7364_01768) | kdsB | 1838021..1838782 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| B5474_RS08825 (NCTC7364_01769) | - | 1838794..1839774 (+) | 981 | WP_038346636.1 | DNA polymerase III subunit delta' | - |
| B5474_RS08830 (NCTC7364_01770) | - | 1839786..1840127 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| B5474_RS08835 (NCTC7364_01771) | - | 1840145..1840918 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| B5474_RS08840 (NCTC7364_01772) | - | 1840956..1841564 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| B5474_RS08845 (NCTC7364_01773) | - | 1841574..1842128 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| B5474_RS08850 (NCTC7364_01774) | xcpV | 1842118..1842498 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| B5474_RS08855 (NCTC7364_01775) | xcpW | 1842498..1843199 (+) | 702 | WP_079548510.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| B5474_RS08860 (NCTC7364_01776) | gspK | 1843199..1844158 (+) | 960 | WP_000301468.1 | type II secretion system minor pseudopilin GspK | - |
| B5474_RS08865 (NCTC7364_01777) | - | 1844388..1844984 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| B5474_RS08870 (NCTC7364_01778) | ung | 1845035..1845748 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| B5474_RS08875 (NCTC7364_01779) | - | 1845745..1846869 (+) | 1125 | WP_150123679.1 | enoyl-CoA hydratase/isomerase family protein | - |
| B5474_RS08880 (NCTC7364_01780) | tadA | 1846876..1847379 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1145147 B5474_RS08850 WP_000836911.1 1842118..1842498(+) (xcpV) [Acinetobacter baumannii strain NCTC7364]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1145147 B5474_RS08850 WP_000836911.1 1842118..1842498(+) (xcpV) [Acinetobacter baumannii strain NCTC7364]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |