Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BQ1177_RS04300 Genome accession   NZ_LT604074
Coordinates   897215..897766 (+) Length   183 a.a.
NCBI ID   WP_087118492.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius isolate LPM01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 892215..902766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ1177_RS04290 gyrA 894115..896667 (+) 2553 WP_081510754.1 DNA gyrase subunit A -
  BQ1177_RS04295 rpsF 896878..897174 (+) 297 WP_269148675.1 30S ribosomal protein S6 -
  BQ1177_RS04300 ssb 897215..897766 (+) 552 WP_087118492.1 single-stranded DNA-binding protein Machinery gene
  BQ1177_RS04305 rpsR 897788..898024 (+) 237 WP_003701427.1 30S ribosomal protein S18 -
  BQ1177_RS04310 - 898087..898950 (-) 864 WP_003701429.1 NAD(P)-dependent oxidoreductase -
  BQ1177_RS04315 - 899096..900109 (+) 1014 WP_087118493.1 glycosyltransferase family 2 protein -
  BQ1177_RS04320 - 900335..901117 (+) 783 WP_049164330.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20208.82 Da        Isoelectric Point: 4.4463

>NTDB_id=1145044 BQ1177_RS04300 WP_087118492.1 897215..897766(+) (ssb) [Ligilactobacillus salivarius isolate LPM01]
MINRAILVGRLTRDPDLRYTASGAAVATFTVAVNRQFTNQQGEREADFINCVMWRKPAENFANFTHKGSLVGIDGRIQTR
SYENQQGIRVYVTEVVAENFSLLESRAEADRYREQHGMTQNNYGNNAPSQNQASQFDSNPFGDSQSNNSFGGNTPANNGA
DNSADPFADNGQSIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1145044 BQ1177_RS04300 WP_087118492.1 897215..897766(+) (ssb) [Ligilactobacillus salivarius isolate LPM01]
GTGATTAATAGAGCTATTCTAGTAGGTCGTTTAACAAGAGATCCTGATTTACGTTACACGGCTTCTGGAGCTGCGGTTGC
TACATTTACTGTTGCTGTAAATCGTCAATTTACTAACCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTAATGT
GGCGTAAACCAGCAGAAAATTTTGCCAACTTTACTCATAAGGGTTCATTGGTTGGGATTGACGGACGAATTCAAACTCGT
TCTTATGAAAACCAGCAAGGAATAAGAGTATATGTTACAGAAGTTGTAGCCGAGAATTTCTCATTGTTGGAATCACGTGC
CGAAGCAGATCGTTATCGTGAACAACATGGAATGACACAAAATAATTACGGAAATAATGCTCCTTCGCAAAATCAAGCAT
CACAGTTTGATAGCAATCCATTCGGTGATTCTCAATCAAATAATAGTTTTGGTGGAAATACACCAGCAAATAATGGAGCA
GATAATAGTGCTGATCCATTTGCTGATAATGGACAATCTATTGATATTTCTGATGATGACTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.574

100

0.656
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.831

100

0.568

Multiple sequence alignment