Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLA12_RS11865 Genome accession   NZ_LT599049
Coordinates   2415707..2416198 (-) Length   163 a.a.
NCBI ID   WP_017865170.1    Uniprot ID   S6FB26
Organism   Lactococcus lactis subsp. lactis strain A12     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2410707..2421198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLA12_RS11865 (LLA12_02515) comX 2415707..2416198 (-) 492 WP_017865170.1 hypothetical protein Regulator
  LLA12_RS11870 (LLA12_02516) ezrA 2416457..2418187 (-) 1731 WP_021723359.1 septation ring formation regulator EzrA -
  LLA12_RS11875 (LLA12_02517) tsf 2418391..2419419 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  LLA12_RS11880 (LLA12_02518) rpsB 2419541..2420308 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19792.62 Da        Isoelectric Point: 5.3596

>NTDB_id=1144895 LLA12_RS11865 WP_017865170.1 2415707..2416198(-) (comX) [Lactococcus lactis subsp. lactis strain A12]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1144895 LLA12_RS11865 WP_017865170.1 2415707..2416198(-) (comX) [Lactococcus lactis subsp. lactis strain A12]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATTGATGAGCTAAGACGGAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAATTAACTCGTATGGAACGATATCGCCTTCGTGAAAAAATAAAAGCCATCTTATTTTCAGAA
GATGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6FB26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.773

100

0.988
  comX Lactococcus lactis subsp. cremoris KW2

76.687

100

0.767

Multiple sequence alignment