Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BN8422_RS11580 Genome accession   NZ_LT598688
Coordinates   2221360..2221755 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate Sa_Newman_UoM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2216360..2226755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN8422_RS11555 thiE 2216960..2217601 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  BN8422_RS11560 thiM 2217603..2218394 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  BN8422_RS11565 thiD 2218378..2219208 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  BN8422_RS11570 tenA 2219201..2219890 (-) 690 WP_000396077.1 thiaminase II -
  BN8422_RS11575 sceD 2220276..2220971 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  BN8422_RS11580 ssb 2221360..2221755 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  BN8422_RS11585 - 2221949..2222389 (+) 441 WP_000846746.1 YwpF-like family protein -
  BN8422_RS11590 fabZ 2222448..2222888 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BN8422_RS11595 murA 2222922..2224187 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BN8422_RS11600 - 2224298..2224531 (-) 234 WP_000384523.1 DUF1146 family protein -
  BN8422_RS11605 - 2224663..2224755 (-) 93 WP_001790611.1 hypothetical protein -
  BN8422_RS11610 - 2225093..2225497 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1144841 BN8422_RS11580 WP_000932694.1 2221360..2221755(-) (ssb) [Staphylococcus aureus isolate Sa_Newman_UoM]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1144841 BN8422_RS11580 WP_000932694.1 2221360..2221755(-) (ssb) [Staphylococcus aureus isolate Sa_Newman_UoM]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment