Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LPM7613_RS12610 Genome accession   NZ_LT598657
Coordinates   2854924..2855583 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila strain Lpm7613 isolate Lpm7613     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2849924..2860583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPM7613_RS12595 - 2850724..2851383 (+) 660 WP_010948343.1 hypothetical protein -
  LPM7613_RS12600 lcl 2851551..2853032 (+) 1482 WP_010948344.1 collagen-like adhesin Lcl -
  LPM7613_RS12605 uvrC 2853056..2854912 (-) 1857 WP_010948345.1 excinuclease ABC subunit UvrC -
  LPM7613_RS12610 letA 2854924..2855583 (-) 660 WP_011216518.1 two-component system response regulator LetA Regulator
  LPM7613_RS12615 phhA 2855708..2856526 (-) 819 WP_010948347.1 phenylalanine 4-monooxygenase -
  LPM7613_RS12620 - 2856965..2858062 (+) 1098 WP_010948348.1 competence/damage-inducible protein A -
  LPM7613_RS12625 cgtA 2858021..2859046 (-) 1026 WP_010948349.1 Obg family GTPase CgtA -
  LPM7613_RS12630 rpmA 2859261..2859539 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  LPM7613_RS12635 rplU 2859552..2859863 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=1144759 LPM7613_RS12610 WP_011216518.1 2854924..2855583(-) (letA) [Legionella pneumophila strain Lpm7613 isolate Lpm7613]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1144759 LPM7613_RS12610 WP_011216518.1 2854924..2855583(-) (letA) [Legionella pneumophila strain Lpm7613 isolate Lpm7613]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTAGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCCTATGTAAAAACCCACTCCCCTGATGTCGTATTATTAG
ATATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACGCGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCT
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAGTCAGG
GGCTGAAGAAATGGCTGCCGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGTCTCAGGATTCCCCTTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995

Multiple sequence alignment