Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   LPM7613_RS09340 Genome accession   NZ_LT598657
Coordinates   2117488..2118294 (-) Length   268 a.a.
NCBI ID   WP_010947712.1    Uniprot ID   Q5ZU12
Organism   Legionella pneumophila strain Lpm7613 isolate Lpm7613     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2112488..2123294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPM7613_RS09315 - 2112932..2113582 (-) 651 WP_010947707.1 lysoplasmalogenase -
  LPM7613_RS09320 - 2113662..2114162 (-) 501 WP_015444348.1 hypothetical protein -
  LPM7613_RS09325 - 2114654..2115514 (+) 861 WP_015444347.1 polysaccharide deacetylase family protein -
  LPM7613_RS09330 - 2115631..2116824 (-) 1194 WP_010947710.1 murein transglycosylase A -
  LPM7613_RS09335 lpp1976 2116934..2117491 (-) 558 WP_010947711.1 hypothetical protein Machinery gene
  LPM7613_RS09340 lpp1977 2117488..2118294 (-) 807 WP_010947712.1 PilW family protein Machinery gene
  LPM7613_RS09345 lpp1978 2118233..2118547 (-) 315 WP_010947713.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LPM7613_RS09350 hisC 2118707..2119816 (+) 1110 WP_015444344.1 histidinol-phosphate transaminase -
  LPM7613_RS09355 - 2119853..2120194 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LPM7613_RS09360 secF 2120367..2121284 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  LPM7613_RS09365 secD 2121297..2123153 (-) 1857 WP_010947717.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31406.50 Da        Isoelectric Point: 9.1917

>NTDB_id=1144751 LPM7613_RS09340 WP_010947712.1 2117488..2118294(-) (lpp1977) [Legionella pneumophila strain Lpm7613 isolate Lpm7613]
MLRGLKKASQLFAPMIWMLIEMGRQTGFSLSEMLISLFLASIITITLTQFYIRSKSQYLKTQEQLEINFDLLWIGDLLSD
SIRKAGFTPCVSVEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVANFMSPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLSNGYQITLKKPMQFRYDEITYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
IKQRSVLDFSIGSDKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1144751 LPM7613_RS09340 WP_010947712.1 2117488..2118294(-) (lpp1977) [Legionella pneumophila strain Lpm7613 isolate Lpm7613]
ATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGATGCTCATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATAACCCTTACTCAGTTTTATATAAGAA
GCAAGTCTCAATACCTAAAAACACAAGAACAGTTAGAAATTAATTTTGATTTGCTGTGGATTGGTGATCTACTAAGCGAC
AGTATTAGAAAGGCTGGATTTACTCCATGCGTAAGTGTCGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
AATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTTCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGG
CGAATTTTATGAGCCCAACACAAATAGTGATTGAAGAATCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACGGTTTCAAAAATAGATAAACTAAGTAATGGATATCAAATTACTTTAAAAAAACCAAT
GCAGTTTCGATACGACGAAATTACTTACTTGGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATTCATGAATTTTATGTTACCAGACGTCTT
ATTAAACAGAGGTCAGTATTGGATTTTTCAATTGGTAGCGATAAGGAAACGCTACGCAAAATTAGTGTTTCGGTACGAAA
TTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZU12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

97.015

100

0.97
  lpp1977 Legionella pneumophila strain ERS1305867

97.015

100

0.97

Multiple sequence alignment