Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC8_RS12490 Genome accession   NZ_CP009982
Coordinates   2703849..2704577 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain FORC_008     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2698849..2709577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC8_RS12475 (FORC8_2381) clpC 2699284..2701857 (-) 2574 WP_053047714.1 ATP-dependent chaperone ClpB Regulator
  FORC8_RS12480 (FORC8_2382) pgeF 2702005..2702733 (-) 729 WP_025639993.1 peptidoglycan editing factor PgeF -
  FORC8_RS12485 (FORC8_2383) rluD 2702735..2703712 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC8_RS12490 (FORC8_2384) comL 2703849..2704577 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  FORC8_RS12495 (FORC8_2385) - 2704712..2706193 (+) 1482 WP_044129359.1 lytic transglycosylase F -
  FORC8_RS12500 (FORC8_2386) hpf 2706524..2706850 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FORC8_RS12505 (FORC8_2387) pheA 2707094..2708272 (+) 1179 WP_053047715.1 prephenate dehydratase -
  FORC8_RS12510 (FORC8_2388) yjjX 2708297..2708830 (+) 534 WP_053047842.1 inosine/xanthosine triphosphatase -
  FORC8_RS12515 (FORC8_2389) trpR 2708879..2709190 (-) 312 WP_025628293.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=114472 FORC8_RS12490 WP_005460312.1 2703849..2704577(+) (comL) [Vibrio parahaemolyticus strain FORC_008]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=114472 FORC8_RS12490 WP_005460312.1 2703849..2704577(+) (comL) [Vibrio parahaemolyticus strain FORC_008]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGTAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405