Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   BAL062_RS01445 Genome accession   NZ_LT594095
Coordinates   312014..312754 (+) Length   246 a.a.
NCBI ID   WP_064792625.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain BAL062     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307014..317754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAL062_RS01430 (BAL062_00287) ponA 307600..310155 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  BAL062_RS01435 (BAL062_00288) pilM 310318..311376 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  BAL062_RS01440 (BAL062_00289) pilN 311376..312017 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  BAL062_RS01445 (BAL062_00290) pilO 312014..312754 (+) 741 WP_064792625.1 type 4a pilus biogenesis protein PilO Machinery gene
  BAL062_RS01450 (BAL062_00291) pilP 312765..313292 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  BAL062_RS01455 (BAL062_00292) pilQ 313360..315525 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  BAL062_RS01460 (BAL062_00293) aroK 315537..316106 (+) 570 WP_000643712.1 shikimate kinase AroK -
  BAL062_RS01465 (BAL062_00294) aroB 316135..317217 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27792.56 Da        Isoelectric Point: 4.8357

>NTDB_id=1144623 BAL062_RS01445 WP_064792625.1 312014..312754(+) (pilO) [Acinetobacter baumannii strain BAL062]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLSYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1144623 BAL062_RS01445 WP_064792625.1 312014..312754(+) (pilO) [Acinetobacter baumannii strain BAL062]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAGCTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment