Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7S03_RS10575 Genome accession   NZ_LT592163
Coordinates   1809697..1810125 (+) Length   142 a.a.
NCBI ID   WP_106158859.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_W     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1804697..1815125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S03_RS10555 (WHOW_01988) metG 1806400..1808454 (+) 2055 WP_010359662.1 methionine--tRNA ligase -
  C7S03_RS10560 (WHOW_01989C) - 1808529..1808837 (-) 309 Protein_1837 NAD(P)-dependent oxidoreductase -
  C7S03_RS14135 - 1808841..1809176 (+) 336 Protein_1838 pilin -
  C7S03_RS10570 (WHOW_01991) - 1809216..1809625 (+) 410 Protein_1839 pilin -
  C7S03_RS10575 (WHOW_01992) pilE 1809697..1810125 (+) 429 WP_106158859.1 pilin Machinery gene
  C7S03_RS10580 (WHOW_01993) - 1810107..1810430 (+) 324 Protein_1841 pilin -
  C7S03_RS10585 (WHOW_01994) - 1810457..1810788 (+) 332 Protein_1842 pilin -
  C7S03_RS14140 - 1810815..1811113 (+) 299 Protein_1843 pilin -
  C7S03_RS14145 - 1811132..1811239 (+) 108 Protein_1844 prepilin-type cleavage/methylation domain-containing protein -
  C7S03_RS14150 - 1811354..1811707 (+) 354 Protein_1845 pilin -
  C7S03_RS10600 (WHOW_01996C) thiC 1812196..1814097 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15378.24 Da        Isoelectric Point: 7.8150

>NTDB_id=1144606 C7S03_RS10575 WP_106158859.1 1809697..1810125(+) (pilE) [Neisseria gonorrhoeae strain WHO_W]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGKWPADNGAAGVASPATDIKGKYVKEVEVKNGVVTATMKSDGVNKEI
KNKKLSLWAKRENGSVKWFCGQPVTRDNKANDTVADAADKDKIETKHLPSTCRDESSLPGIT

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1144606 C7S03_RS10575 WP_106158859.1 1809697..1810125(+) (pilE) [Neisseria gonorrhoeae strain WHO_W]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCAAATGGCCCGCCGACAACGGCGCTGCCGGCGTGGCATCCCCCGCCACCGACATCAAAG
GCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATC
AAAAACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CAACAAAGCCAACGACACCGTTGCCGACGCCGCCGACAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCG
ATGAATCATCGTTGCCGGGTATTACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

74.638

97.183

0.725
  pilE Neisseria gonorrhoeae strain FA1090

70.29

97.183

0.683

Multiple sequence alignment