Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7R97_RS14310 Genome accession   NZ_LT592161
Coordinates   1939604..1939732 (+) Length   42 a.a.
NCBI ID   WP_306473064.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Y     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1934604..1944732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R97_RS11365 (WHOY_02144C) - 1935301..1935750 (-) 450 WP_003692085.1 CopD family copper resistance protein -
  C7R97_RS11370 (WHOY_02145C) waaA 1935791..1937062 (-) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  C7R97_RS11375 (WHOY_02146C) gnd 1937125..1938573 (-) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  C7R97_RS11380 (WHOY_02147C) - 1938653..1938916 (-) 264 WP_017147189.1 hypothetical protein -
  C7R97_RS14310 (WHOY_02148) pilC 1939604..1939732 (+) 129 WP_306473064.1 hypothetical protein Machinery gene
  C7R97_RS11390 (WHOY_02149) pilC 1939699..1942713 (+) 3015 WP_229700537.1 PilC family type IV pilus tip adhesin Machinery gene
  C7R97_RS11405 (WHOY_02151) - 1943365..1943649 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 42 a.a.        Molecular weight: 4686.53 Da        Isoelectric Point: 12.5257

>NTDB_id=1144566 C7R97_RS14310 WP_306473064.1 1939604..1939732(+) (pilC) [Neisseria gonorrhoeae strain WHO_Y]
MNKTLKRQVFRHTALYAAILMFSHTGGGGGGRWRKPINTLLS

Nucleotide


Download         Length: 129 bp        

>NTDB_id=1144566 C7R97_RS14310 WP_306473064.1 1939604..1939732(+) (pilC) [Neisseria gonorrhoeae strain WHO_Y]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGGGCGATGGCGCAAACCCATCAATACGCTATTATCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

96.667

71.429

0.69

Multiple sequence alignment