Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7R97_RS11390 Genome accession   NZ_LT592161
Coordinates   1939699..1942713 (+) Length   1004 a.a.
NCBI ID   WP_229700537.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Y     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1934699..1947713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R97_RS11365 (WHOY_02144C) - 1935301..1935750 (-) 450 WP_003692085.1 CopD family copper resistance protein -
  C7R97_RS11370 (WHOY_02145C) waaA 1935791..1937062 (-) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  C7R97_RS11375 (WHOY_02146C) gnd 1937125..1938573 (-) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  C7R97_RS11380 (WHOY_02147C) - 1938653..1938916 (-) 264 WP_017147189.1 hypothetical protein -
  C7R97_RS14310 (WHOY_02148) pilC 1939604..1939732 (+) 129 WP_306473064.1 hypothetical protein Machinery gene
  C7R97_RS11390 (WHOY_02149) pilC 1939699..1942713 (+) 3015 WP_229700537.1 PilC family type IV pilus tip adhesin Machinery gene
  C7R97_RS11405 (WHOY_02151) - 1943365..1943649 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  C7R97_RS11415 (WHOY_02152C) yccS 1944132..1946282 (-) 2151 WP_003697785.1 YccS family putative transporter -
  C7R97_RS11420 (WHOY_02153C) - 1946399..1947625 (-) 1227 WP_003697786.1 PilT/PilU family type 4a pilus ATPase -

Sequence

Protein


Download         Length: 1004 a.a.        Molecular weight: 109608.43 Da        Isoelectric Point: 9.8322

>NTDB_id=1144560 C7R97_RS11390 WP_229700537.1 1939699..1942713(+) (pilC) [Neisseria gonorrhoeae strain WHO_Y]
MAQTHQYAIIMNGRNQPEVKQNVPSSIKDKDRRREYTYYTHRTGGGSVSFNNNDTLVSQQSGTAVFGTATYLPPYGKVSG
FDADALKERNNAVDWIRTTRIALAGYSYIDVICRSYTGCPKLVYKTRFTFGQQGLKRKAGSKLDIYEDKSRENSPIYKLS
DYPWLGVSFNLGSENTVQNSKLFNKLISSFREGNNNQTIVSTTEGNPISLGDRQREHTAVAYYLNAKLHLLDKKGIEDIA
QGKIVDLGILKPHVETTGRSLLDFWARWDIKDTGQIPVKLGLPQVKAGRCTNKPNPNNNTKAPSPALTAPALWFGPGQDG
KAEMYSASVSTYPDSSSSRIFLQELKTQTEPGKPGRYSLKSLNDGEIKSRQPSFNGRQTIIRLDDGVHLIKLNGSKDEVA
AFVNLNGNNTGKNDTFGIVKEANVNLDADEWKKVLLPWTVRGPDNDNKFKSINQKPEKYSQRYRIRDNNGNRDLGDIVNS
PIVAVGGYLATAANDGMVHIFKKNGGSDERSYNLKLSYIPGTMPRKDIQSQESTLAKELRAFAEKGYVGDRYGVDGGFVL
RQVELSGQKHVFMFGAMGFGGRGAYALDLSKINGNYPAAAPLFDVKNGDKNGKNGKNRVEVELGYTVGTPQIGKIRNGKY
AAFLASGYAAKQIASQENKTALYVYDLKDTLGTPIAKIEVKGGKGGLSSPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSN
SDPSKWSVSTIFEGGKPITSAPAVSRLADKRVVIFGTGSDLTEDDVLDTKEQYIYGIFDDDKAANNVNASRGVLGSGLLE
QHLTQENKTLFLNKRSDGSGSKGWAVKLTGGRRVTVKPTVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSA
RPIVPEANTAVAQYSGHKKTAGGKSVPIGCMWKNSKTVCPNGYVYDKPVNVRYLDETETDGFSTTADGDAGGSGIDPAGR
RPGKNNRCFSKKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3015 bp        

>NTDB_id=1144560 C7R97_RS11390 WP_229700537.1 1939699..1942713(+) (pilC) [Neisseria gonorrhoeae strain WHO_Y]
ATGGCGCAAACCCATCAATACGCTATTATCATGAACGGGCGAAACCAGCCCGAGGTAAAGCAGAATGTGCCATCTTCAAT
AAAGGACAAAGACAGGAGGCGCGAATATACTTATTATACGCACAGAACAGGAGGAGGCTCTGTCTCATTCAACAATAACG
ATACCCTTGTTTCCCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGT
TTTGATGCCGACGCTCTGAAAGAGCGCAACAATGCCGTTGATTGGATTCGTACCACCCGCATCGCGCTGGCAGGCTACTC
CTACATCGACGTCATATGCAGAAGCTACACAGGCTGTCCCAAACTTGTCTATAAAACCCGATTTACCTTCGGTCAACAAG
GGTTGAAAAGAAAGGCAGGCAGCAAGCTGGATATATACGAAGACAAAAGCCGCGAAAATTCGCCCATTTACAAATTGTCG
GATTATCCTTGGTTGGGCGTATCTTTCAATTTGGGCAGCGAGAATACCGTCCAAAATAGCAAATTATTCAACAAATTGAT
ATCTTCTTTTAGAGAAGGCAATAATAATCAAACCATCGTCTCTACGACAGAAGGCAACCCTATTTCCCTTGGCGACCGGC
AGCGCGAACATACCGCCGTGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGACAAAAAAGGGATTGAAGATATCGCC
CAAGGCAAAATAGTGGATTTGGGTATCTTGAAACCGCACGTCGAGACGACAGGACGAAGCTTGCTAGATTTTTGGGCTAG
GTGGGACATTAAAGATACCGGGCAGATTCCGGTCAAGCTCGGCCTGCCGCAAGTCAAAGCAGGCCGCTGCACCAACAAAC
CGAACCCCAATAATAATACCAAAGCCCCTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGACCCGGGCAAGATGGT
AAGGCGGAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAAC
TCAAACCGAACCCGGCAAACCCGGCCGCTATTCCCTCAAATCTTTGAATGATGGTGAGATTAAAAGTCGACAGCCGAGTT
TCAACGGGCGGCAAACAATCATCCGATTGGATGACGGCGTACATTTGATCAAACTGAATGGAAGCAAGGATGAGGTCGCC
GCTTTTGTCAATTTAAATGGAAACAACACCGGCAAAAACGACACTTTCGGCATTGTTAAGGAAGCGAACGTCAATCTTGA
CGCCGACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCCGATAATGACAATAAATTTAAATCAATTAACC
AAAAACCAGAAAAATACAGCCAAAGATACCGCATCCGCGACAACAACGGCAATCGCGATTTGGGCGACATCGTCAACAGC
CCGATTGTCGCGGTCGGCGGGTATTTGGCAACCGCCGCGAACGACGGGATGGTGCATATCTTCAAAAAAAACGGCGGCAG
TGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCAAGGATATTCAAAGCCAAGAATCCA
CCCTTGCCAAAGAGCTGCGCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTG
CGCCAAGTCGAACTGAGCGGGCAAAAACACGTGTTTATGTTCGGCGCGATGGGTTTTGGCGGCAGGGGCGCGTATGCCTT
GGATTTAAGCAAAATCAACGGAAATTATCCGGCCGCCGCTCCCCTGTTTGATGTCAAAAATGGCGATAAAAACGGCAAAA
ACGGCAAAAATCGCGTGGAAGTGGAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAATCCGCAACGGCAAATAC
GCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAACAAATTGCCAGCCAAGAAAATAAAACCGCGCTGTATGTGTATGATTT
GAAAGACACCTTAGGTACGCCGATTGCAAAAATCGAAGTGAAGGGCGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGG
ATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCGGGGCGGGAATATGTACCGCTTTGATTTGAGCAAT
TCCGATCCTAGTAAATGGTCTGTAAGCACTATTTTCGAAGGCGGGAAGCCGATTACCTCCGCGCCCGCCGTTTCCCGACT
GGCAGACAAACGCGTCGTCATCTTCGGTACGGGCAGCGATTTGACCGAAGATGATGTACTCGATACGAAAGAACAATATA
TTTACGGTATCTTTGACGACGATAAGGCGGCGAATAATGTAAATGCAAGCCGCGGCGTTTTGGGGAGCGGGCTGCTCGAG
CAACACCTTACTCAGGAAAATAAAACATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGGGCTGGGCGGTGAA
ATTGACAGGCGGACGGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTCACCATCCGTAGCTATACGG
GTAATGACAAATGCGGCGCGCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCG
CGCCCGATTGTGCCGGAAGCCAATACGGCTGTCGCACAATATTCCGGCCATAAGAAAACCGCCGGCGGCAAGTCCGTCCC
CATAGGCTGCATGTGGAAAAACAGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGTTATC
TGGATGAAACGGAAACAGACGGATTTTCAACGACGGCGGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGCCGGCAGG
CGTCCCGGCAAAAACAACCGCTGCTTCTCCAAAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATAT
TACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(474-813)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

74.143

100

0.754

Multiple sequence alignment