Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7S04_RS10755 Genome accession   NZ_LT592159
Coordinates   1819373..1819861 (+) Length   162 a.a.
NCBI ID   WP_269472471.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_U     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1814373..1824861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S04_RS10735 (WHOU_02003) metG 1815804..1817858 (+) 2055 WP_106333499.1 methionine--tRNA ligase -
  C7S04_RS10740 (WHOU_02004C) - 1817933..1818241 (-) 309 Protein_1845 NAD(P)-dependent oxidoreductase -
  C7S04_RS10745 (WHOU_02005) - 1818245..1818577 (+) 333 Protein_1846 pilin -
  C7S04_RS10750 (WHOU_02006) - 1818604..1818959 (+) 356 Protein_1847 pilin -
  C7S04_RS10755 (WHOU_02007) pilE 1819373..1819861 (+) 489 WP_269472471.1 pilin Machinery gene
  C7S04_RS14640 - 1819843..1820178 (+) 336 Protein_1849 pilin -
  C7S04_RS10775 (WHOU_02009) - 1820604..1820987 (+) 384 Protein_1850 pilin -
  C7S04_RS10780 - 1821028..1821365 (+) 338 Protein_1851 pilin -
  C7S04_RS10790 (WHOU_02010C) thiC 1821844..1823745 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17714.07 Da        Isoelectric Point: 9.8038

>NTDB_id=1144513 C7S04_RS10755 WP_269472471.1 1819373..1819861(+) (pilE) [Neisseria gonorrhoeae strain WHO_U]
MGIRNVKSKETVLPDKFPYRQTRIPARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNDSAGVASPPSNIKGKYVESVTV
ENGVVTAKMLSSGVNKEIQGKKLSLWAKREAGSVKWFCGRPVKRDAKDGTDDVAKDGKDNEKIDTKHLPSTCRDESSLPG
IA

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1144513 C7S04_RS10755 WP_269472471.1 1819373..1819861(+) (pilE) [Neisseria gonorrhoeae strain WHO_U]
GTGGGAATCCGGAACGTAAAATCTAAAGAAACCGTTTTACCCGATAAGTTTCCGTACCGACAGACCCGGATTCCCGCCCG
CGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAAT
GGCCGGAAAACAACGACTCTGCCGGCGTGGCATCCCCCCCCTCCAACATCAAAGGCAAATATGTTGAAAGCGTTACGGTC
GAAAACGGCGTCGTTACCGCCAAAATGCTTTCAAGCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTATCCCTGTGGGC
CAAGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTAAGCGCGACGCCAAAGACGGCACCGACGACGTCG
CCAAAGACGGCAAAGACAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCGTTGCCGGGT
ATTGCCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(26-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

77.273

81.481

0.63
  pilE Neisseria gonorrhoeae strain FA1090

74.242

81.481

0.605

Multiple sequence alignment