Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   C7S04_RS10365 Genome accession   NZ_LT592159
Coordinates   1753708..1754412 (-) Length   234 a.a.
NCBI ID   WP_010951331.1    Uniprot ID   Q5F649
Organism   Neisseria gonorrhoeae strain WHO_U     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1748708..1759412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S04_RS10350 (WHOU_01935C) - 1749069..1750070 (-) 1002 WP_004467106.1 peptidylprolyl isomerase -
  C7S04_RS10355 (WHOU_01936C) - 1750172..1752577 (-) 2406 WP_003691904.1 LPS-assembly protein LptD -
  C7S04_RS10360 (WHOU_01937) amgK 1752647..1753651 (+) 1005 WP_003689901.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  C7S04_RS10365 (WHOU_01938C) dsbA1 1753708..1754412 (-) 705 WP_010951331.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  C7S04_RS10370 (WHOU_01939) murJ 1754850..1756388 (+) 1539 WP_003689904.1 murein biosynthesis integral membrane protein MurJ -
  C7S04_RS10375 (WHOU_01941) - 1756521..1757477 (+) 957 WP_047923786.1 YheT family hydrolase -
  C7S04_RS10380 (WHOU_01942) trpC 1757528..1758310 (+) 783 WP_003689906.1 indole-3-glycerol phosphate synthase TrpC -

Sequence


Protein


Download         Length: 234 a.a.        Molecular weight: 25420.13 Da        Isoelectric Point: 5.6758

>NTDB_id=1144510 C7S04_RS10365 WP_010951331.1 1753708..1754412(-) (dsbA1) [Neisseria gonorrhoeae strain WHO_U]
MKSRHLALALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHC
ARLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLPLARLAAAVDMAAAESKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQ
TAFDGKKVLAAYESPESQARAGKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1144510 C7S04_RS10365 WP_010951331.1 1753708..1754412(-) (dsbA1) [Neisseria gonorrhoeae strain WHO_U]
ATGAAATCCAGACACCTCGCCCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAAC
CAGCGTCCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGACTGGTCGAAGGGCAAAACTACACCG
TCCTTGCCAACCCGATTCCCCAACAGCAGGCAGGCAAGGTTGAAGTGCTTGAGTTTTTCGGCTATTTTTGTCCGCACTGC
GCCCGCCTCGAACCTGTTTTGAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTG
GCAGAAAGAAATGCTGCCGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGAAAGCAAAGATGTGGCGAACA
GCCATATTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAA
ACCGCCTTTGACGGCAAAAAAGTCCTTGCCGCCTACGAATCCCCCGAAAGTCAGGCGCGCGCCGGCAAAATGCAGGAGCT
GACCGAAACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTTGAATTTGCCGACTGGGAGT
CCGGTATGAACACCATCGACCTTTTGGCGGACAAAGTACGTGAAGAACAAAAAGCCGCGCAGTAG

Domains


Predicted by InterproScan.

(65-214)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5F649

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

97.009

100

0.97

  dsbA2 Neisseria meningitidis MC58

76.19

80.769

0.615


Multiple sequence alignment