Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C7S04_RS02085 Genome accession   NZ_LT592159
Coordinates   352731..353534 (-) Length   267 a.a.
NCBI ID   WP_050154745.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_U     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 347731..358534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S04_RS13410 - 350135..350410 (-) 276 WP_153707850.1 hypothetical protein -
  C7S04_RS02080 (WHOU_00365) comA 350442..352661 (+) 2220 WP_020997305.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C7S04_RS02085 (WHOU_00366C) comL 352731..353534 (-) 804 WP_050154745.1 outer membrane protein assembly factor BamD Machinery gene
  C7S04_RS02090 (WHOU_00367) rluD 353533..354657 (+) 1125 WP_003687642.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C7S04_RS02095 (WHOU_00368C) - 354810..355757 (-) 948 Protein_344 bile acid:sodium symporter family protein -
  C7S04_RS02100 - 355834..356058 (-) 225 WP_225577482.1 hypothetical protein -
  C7S04_RS02105 (WHOU_00370) pgeF 356211..356990 (+) 780 WP_003690756.1 peptidoglycan editing factor PgeF -
  C7S04_RS02110 (WHOU_00371) lptE 357042..357521 (+) 480 WP_003690758.1 LPS assembly lipoprotein LptE -
  C7S04_RS02115 (WHOU_00372) holA 357523..358521 (+) 999 WP_003690761.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30837.92 Da        Isoelectric Point: 9.3372

>NTDB_id=1144482 C7S04_RS02085 WP_050154745.1 352731..353534(-) (comL) [Neisseria gonorrhoeae strain WHO_U]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNQDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1144482 C7S04_RS02085 WP_050154745.1 352731..353534(-) (comL) [Neisseria gonorrhoeae strain WHO_U]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACCAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

99.625

100

0.996
  comL Neisseria meningitidis MC58

95.88

100

0.959

Multiple sequence alignment