Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7S06_RS10210 Genome accession   NZ_LT592157
Coordinates   1732464..1732838 (+) Length   124 a.a.
NCBI ID   WP_154235878.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO P     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1727464..1737838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S06_RS10170 (WHOP_01906C) - 1728761..1729381 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  C7S06_RS10175 - 1729580..1729956 (-) 377 Protein_1752 transposase -
  C7S06_RS10185 - 1730265..1730390 (-) 126 Protein_1753 IS110 family transposase -
  C7S06_RS10195 (WHOP_01908) - 1730953..1731372 (+) 420 Protein_1754 pilin -
  C7S06_RS10200 (WHOP_01909) - 1731503..1731883 (+) 381 Protein_1755 pilin -
  C7S06_RS10205 (WHOP_01910) - 1732058..1732438 (+) 381 Protein_1756 pilin -
  C7S06_RS10210 (WHOP_01911) pilE 1732464..1732838 (+) 375 WP_154235878.1 pilin Machinery gene
  C7S06_RS10215 (WHOP_01912) - 1733316..1733702 (+) 387 Protein_1758 pilin -
  C7S06_RS10230 (WHOP_01913) lpxC 1734369..1735292 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  C7S06_RS10240 (WHOP_01914) - 1735420..1735817 (+) 398 Protein_1760 pilin -
  C7S06_RS10265 (WHOP_01915) - 1736873..1737388 (+) 516 Protein_1761 pilin -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13277.77 Da        Isoelectric Point: 8.7131

>NTDB_id=1144466 C7S06_RS10210 WP_154235878.1 1732464..1732838(+) (pilE) [Neisseria gonorrhoeae strain WHO P]
MSNTSKKSAVTEYCPNHGKWPADNGAAGVASPSDIKGKYVQKVEVAKGVVTAQMNPSGVNNEIKDKKLSLWAKRQDGSVK
WFCGQPVTRDDKANDTVADAADNDGKIDTKHLPSTCRDKASDAN

Nucleotide


Download         Length: 375 bp        

>NTDB_id=1144466 C7S06_RS10210 WP_154235878.1 1732464..1732838(+) (pilE) [Neisseria gonorrhoeae strain WHO P]
ATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAGTATTGCCCGAATCACGGCAAATGGCCCGCCGACAACGGCGCTGC
CGGCGTGGCATCCCCCTCCGACATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCCAAA
TGAATCCAAGCGGCGTAAACAATGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAA
TGGTTCTGCGGACAGCCGGTTACGCGCGACGACAAAGCCAACGACACCGTTGCCGACGCCGCCGACAACGACGGCAAAAT
CGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGGCATCTGATGCCAACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

74.79

95.968

0.718
  pilE Neisseria gonorrhoeae strain FA1090

76.724

93.548

0.718

Multiple sequence alignment