Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   C7S06_RS03065 Genome accession   NZ_LT592157
Coordinates   522565..523176 (+) Length   203 a.a.
NCBI ID   WP_047923832.1    Uniprot ID   A0AAX2TSQ3
Organism   Neisseria gonorrhoeae strain WHO P     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517565..528176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S06_RS03035 (WHOP_00544C) - 517887..518468 (-) 582 WP_047923823.1 superoxide dismutase -
  C7S06_RS03045 (WHOP_00545) dnaB 518632..520038 (+) 1407 WP_047923824.1 replicative DNA helicase -
  C7S06_RS03050 (WHOP_00546) pilH 520346..521008 (+) 663 WP_047923835.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7S06_RS03055 (WHOP_00547) pilI 521040..521648 (+) 609 WP_047923834.1 type IV pilus modification protein PilV Machinery gene
  C7S06_RS03060 (WHOP_00548) pilJ 521645..522586 (+) 942 WP_047923833.1 PilW family protein Machinery gene
  C7S06_RS03065 (WHOP_00549) pilK 522565..523176 (+) 612 WP_047923832.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7S06_RS03070 (WHOP_00550) pilL 523178..523651 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  C7S06_RS03075 (WHOP_00551C) - 523721..524029 (-) 309 WP_025456241.1 AzlD family protein -
  C7S06_RS03080 - 524026..524737 (-) 712 Protein_524 AzlC family ABC transporter permease -
  C7S06_RS03085 (WHOP_00554) dut 524903..525355 (+) 453 WP_003701071.1 dUTP diphosphatase -
  C7S06_RS03090 (WHOP_00555) dapC 525427..526614 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  C7S06_RS03095 (WHOP_00556) yaaA 526770..527549 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22035.98 Da        Isoelectric Point: 8.4486

>NTDB_id=1144444 C7S06_RS03065 WP_047923832.1 522565..523176(+) (pilK) [Neisseria gonorrhoeae strain WHO P]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGKVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1144444 C7S06_RS03065 WP_047923832.1 522565..523176(+) (pilK) [Neisseria gonorrhoeae strain WHO P]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAAAGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956

Multiple sequence alignment