Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   C7S06_RS03050 Genome accession   NZ_LT592157
Coordinates   520346..521008 (+) Length   220 a.a.
NCBI ID   WP_047923835.1    Uniprot ID   A0AAX2TSQ4
Organism   Neisseria gonorrhoeae strain WHO P     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515346..526008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S06_RS03015 (WHOP_00541C) cysT 515466..516302 (-) 837 WP_047923822.1 sulfate ABC transporter permease subunit CysT -
  C7S06_RS03020 (WHOP_00542) - 516483..516815 (+) 333 WP_003687908.1 hypothetical protein -
  C7S06_RS03025 (WHOP_00543) - 517146..517655 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  C7S06_RS03035 (WHOP_00544C) - 517887..518468 (-) 582 WP_047923823.1 superoxide dismutase -
  C7S06_RS03045 (WHOP_00545) dnaB 518632..520038 (+) 1407 WP_047923824.1 replicative DNA helicase -
  C7S06_RS03050 (WHOP_00546) pilH 520346..521008 (+) 663 WP_047923835.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7S06_RS03055 (WHOP_00547) pilI 521040..521648 (+) 609 WP_047923834.1 type IV pilus modification protein PilV Machinery gene
  C7S06_RS03060 (WHOP_00548) pilJ 521645..522586 (+) 942 WP_047923833.1 PilW family protein Machinery gene
  C7S06_RS03065 (WHOP_00549) pilK 522565..523176 (+) 612 WP_047923832.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7S06_RS03070 (WHOP_00550) pilL 523178..523651 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  C7S06_RS03075 (WHOP_00551C) - 523721..524029 (-) 309 WP_025456241.1 AzlD family protein -
  C7S06_RS03080 - 524026..524737 (-) 712 Protein_524 AzlC family ABC transporter permease -
  C7S06_RS03085 (WHOP_00554) dut 524903..525355 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24357.84 Da        Isoelectric Point: 9.6051

>NTDB_id=1144441 C7S06_RS03050 WP_047923835.1 520346..521008(+) (pilH) [Neisseria gonorrhoeae strain WHO P]
MCTRKQQGFTLIELLIVMAIAAIMATIALPNMGGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NGCDFSKKGRGMLAFGDKNGNKAYDGDTKDVFLRNVVLNDTDDSRINYAFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1144441 C7S06_RS03050 WP_047923835.1 520346..521008(+) (pilH) [Neisseria gonorrhoeae strain WHO P]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGGGCGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATGGATGTGATTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

96.364

100

0.964

Multiple sequence alignment