Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7S06_RS00320 Genome accession   NZ_LT592157
Coordinates   52594..55752 (-) Length   1052 a.a.
NCBI ID   WP_126317781.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO P     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47594..60752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S06_RS00290 (WHOP_00047C) - 47735..48298 (-) 564 WP_002214615.1 ComF family protein -
  C7S06_RS00295 (WHOP_00048C) - 49479..49868 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  C7S06_RS00300 (WHOP_00049C) - 50031..50410 (-) 380 Protein_49 VOC family protein -
  C7S06_RS00305 (WHOP_00050C) carA 50464..51597 (-) 1134 WP_003687283.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  C7S06_RS00320 (WHOP_00051C) pilC 52594..55752 (-) 3159 WP_126317781.1 PilC family type IV pilus tip adhesin Machinery gene
  C7S06_RS12990 - 56084..56227 (+) 144 WP_154235612.1 hypothetical protein -
  C7S06_RS00345 (WHOP_00053C) apbC 57754..58833 (-) 1080 WP_003698014.1 iron-sulfur cluster carrier protein ApbC -
  C7S06_RS00355 (WHOP_00055) - 59200..59709 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  C7S06_RS00365 (WHOP_00057) nadR 60050..60490 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -

Sequence

Protein


Download         Length: 1052 a.a.        Molecular weight: 115665.00 Da        Isoelectric Point: 9.7917

>NTDB_id=1144429 C7S06_RS00320 WP_126317781.1 52594..55752(-) (pilC) [Neisseria gonorrhoeae strain WHO P]
MNKTLKRRVFRHTALYTAILMFSHTGGGGGAMAQTHQYAIIMNERKQPEVKWKDQYNQSALKDKSRERTFSHTSQKNSLG
ITSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIHTTRPGLAGYGYTGIRCGSTKDCPKL
TYKTRFSFDNPDLLKTRGGLDRHTEPSRENSPIYKLKDYPWLGVSFNLGGEGTAKDGRSSSKLVSSFDENNSNSNQNLVY
TTEDHRISLSNWQQETTAMAYYLNAKLHLLDKKGIKDITGKTVRLGVLKPSIDVKTQNTGLSGILNFWSKWDIKDNGQIP
VKLGLPEVKAGRCINEPNPNKNTQAPSPALTAPALWFGSVQNGKVQMYSASVSTYPGSSSSRIFLQELKTRTDPARPGRH
SLAALDTQNIKSREPNFNSRQTVIRLPGGVYRIAPTRDRIVGLNGNDGKNDTFGIYKDRLVTPEVDEWAKVLLPWTVRYY
GNDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDQRGYE
LKLSYIPGTMERKDIEGNDSDLAKELRAFAEQGYVGDRYGVDGGFVLRRITDDQDKQKHFFMFGAMGLGGRGAYALDLTK
IDSNPVGVSMFDVQNDKNNNKNDSNRVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKDIVSSDNTTALYVYDLKDTLGTP
IAKIEAPGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSSDKPSEWAVRTIFEGTKPITSAPAVSRLADKRVVI
FGTGSDLSEEDVVGKDQQYIYGIFDDDKGTGTVKVTVQNGTGGGLLEQTLTKENNTLFLSNNKASGGSADKGWVVKLREG
ERVTVKPTVVLRTAFVTIRSYTGMDKCGAQTAILGINTADGGALTPRSARPIVPDHNSVAQYSGHKKTTDGKSVPIGCMW
KNSKTVCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMC
GIKRLSWREVFF

Nucleotide


Download         Length: 3159 bp        

>NTDB_id=1144429 C7S06_RS00320 WP_126317781.1 52594..55752(-) (pilC) [Neisseria gonorrhoeae strain WHO P]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATACCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGCGATGGCGCAAACCCATCAATACGCTATTATCATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGAAGG
ATCAATATAATCAATCAGCATTAAAGGACAAAAGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACAGCCTCGGC
ATCACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGC
CACCTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGA
TTCATACCACCCGGCCCGGGCTGGCAGGCTACGGCTACACCGGTATCCGTTGCGGAAGTACCAAAGACTGTCCCAAACTT
ACCTATAAAACCCGATTTTCCTTCGATAATCCCGACTTGCTAAAAACAAGAGGCGGGCTGGATAGGCACACAGAGCCAAG
CCGCGAAAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGTGTGTCTTTCAATTTGGGCGGCGAGGGTACCG
CCAAAGATGGCAGATCATCCAGCAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTAT
ACGACAGAAGACCACCGTATTTCCCTTAGCAACTGGCAGCAAGAAACGACCGCCATGGCCTATTATCTGAACGCCAAGCT
GCACCTGCTGGACAAAAAAGGGATTAAAGATATCACCGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATG
TGAAGACACAAAATACGGGGCTTAGCGGCATTCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATTCCG
GTCAAGCTCGGCCTGCCGGAAGTCAAAGCAGGCCGCTGCATCAACGAACCGAACCCCAATAAGAATACCCAAGCCCCTTC
GCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGCTCTGTGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCA
CCTACCCCGGCAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCGAACCGACCCCGCCCGGCCCGGCCGGCAT
TCCCTCGCCGCTTTGGATACGCAGAACATCAAAAGCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCC
GGGCGGCGTGTACCGGATCGCCCCGACTCGCGACAGGATCGTGGGTTTGAATGGCAATGACGGCAAAAACGACACTTTCG
GCATCTACAAGGACAGGCTCGTCACACCTGAGGTCGACGAGTGGGCAAAAGTGCTGCTGCCTTGGACGGTCCGGTATTAC
GGTAATGACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATA
CCGCATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCG
GCGGGTATCTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACAGACCAACGAGGCTACGAA
CTGAAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAGGATATTGAAGGCAATGACTCCGACCTCGCCAAAGAGCTGCG
CGCCTTTGCCGAACAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACC
AAGACAAGCAAAAACATTTCTTTATGTTTGGTGCGATGGGCCTGGGCGGCAGAGGCGCATACGCCTTGGATTTGACCAAA
ATCGACAGCAACCCGGTCGGCGTTTCCATGTTTGATGTCCAAAACGACAAAAATAACAATAAGAATGACAGTAATCGCGT
GAAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTT
ATGCGGCTAAAGATATTGTCAGCAGCGATAATACAACCGCGCTGTATGTGTATGATTTGAAAGACACCTTAGGTACGCCG
ATTGCAAAAATCGAAGCACCCGGCGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGT
CGATATCGCCTATGCCGGCGATCGGGGCGGGAATATGTACCGCTTTGATTTGAGCAGCGACAAGCCGTCCGAGTGGGCTG
TACGCACTATTTTCGAAGGCACAAAACCGATTACTTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTCATC
TTCGGTACGGGCAGCGATTTGAGTGAAGAGGATGTAGTCGGTAAGGATCAACAATATATTTACGGTATCTTTGACGACGA
TAAGGGGACGGGGACGGTTAAGGTAACGGTACAAAACGGCACGGGAGGCGGGCTGCTCGAGCAAACGCTTACGAAGGAAA
ATAACACCTTGTTCCTGAGCAATAATAAGGCATCCGGCGGATCGGCCGATAAAGGCTGGGTAGTGAAATTGAGGGAAGGA
GAACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTCACCATCCGCAGCTATACGGGCATGGACAAATG
TGGCGCGCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGC
CGGATCACAATTCGGTTGCGCAATATTCCGGCCATAAGAAAACCACCGACGGCAAGTCCGTCCCCATAGGCTGTATGTGG
AAAAACAGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGCTACCTGGACGAAAAGAAAAC
AGACGATTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATA
ACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGC
GGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(522-863)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

69.209

100

0.699

Multiple sequence alignment