Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7S01_RS10445 Genome accession   NZ_LT592155
Coordinates   1756729..1757157 (+) Length   142 a.a.
NCBI ID   WP_106158859.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_X     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1751729..1762157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S01_RS10420 (WHOX_01923) metG 1753432..1755486 (+) 2055 WP_010359662.1 methionine--tRNA ligase -
  C7S01_RS10425 (WHOX_01924C) - 1755561..1755869 (-) 309 Protein_1768 NAD(P)-dependent oxidoreductase -
  C7S01_RS13985 - 1755873..1756208 (+) 336 Protein_1769 pilin -
  C7S01_RS10435 (WHOX_01926) - 1756248..1756657 (+) 410 Protein_1770 pilin -
  C7S01_RS10445 (WHOX_01927) pilE 1756729..1757157 (+) 429 WP_106158859.1 pilin Machinery gene
  C7S01_RS10450 (WHOX_01928) - 1757139..1757480 (+) 342 Protein_1772 pilin -
  C7S01_RS13530 - 1757507..1757931 (+) 425 Protein_1773 pilin -
  C7S01_RS13995 - 1758046..1758408 (+) 363 Protein_1774 pilin -
  C7S01_RS10465 (WHOX_01930C) thiC 1758897..1760798 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15378.24 Da        Isoelectric Point: 7.8150

>NTDB_id=1144421 C7S01_RS10445 WP_106158859.1 1756729..1757157(+) (pilE) [Neisseria gonorrhoeae strain WHO_X]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGKWPADNGAAGVASPATDIKGKYVKEVEVKNGVVTATMKSDGVNKEI
KNKKLSLWAKRENGSVKWFCGQPVTRDNKANDTVADAADKDKIETKHLPSTCRDESSLPGIT

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1144421 C7S01_RS10445 WP_106158859.1 1756729..1757157(+) (pilE) [Neisseria gonorrhoeae strain WHO_X]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCAAATGGCCCGCCGACAACGGCGCTGCCGGCGTGGCATCCCCCGCCACCGACATCAAAG
GCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATC
AAAAACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CAACAAAGCCAACGACACCGTTGCCGACGCCGCCGACAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCG
ATGAATCATCGTTGCCGGGTATTACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

74.638

97.183

0.725
  pilE Neisseria gonorrhoeae strain FA1090

70.29

97.183

0.683

Multiple sequence alignment