Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7S01_RS00315 Genome accession   NZ_LT592155
Coordinates   52663..55827 (-) Length   1054 a.a.
NCBI ID   WP_115067289.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_X     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47663..60827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S01_RS00285 (WHOX_00049C) - 47828..48391 (-) 564 WP_002214615.1 ComF family protein -
  C7S01_RS00295 (WHOX_00050C) - 49293..49682 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  C7S01_RS00300 (WHOX_00051C) - 49845..50224 (-) 380 Protein_49 VOC family protein -
  C7S01_RS00305 (WHOX_00052C) carA 50278..51411 (-) 1134 WP_003687283.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  C7S01_RS00315 (WHOX_00053C) pilC 52663..55827 (-) 3165 WP_115067289.1 PilC family type IV pilus tip adhesin Machinery gene
  C7S01_RS00335 (WHOX_00055C) apbC 57365..58444 (-) 1080 WP_106158884.1 iron-sulfur cluster carrier protein ApbC -
  C7S01_RS00345 (WHOX_00057) - 58818..59327 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  C7S01_RS00355 (WHOX_00059) nadR 59668..60108 (+) 441 WP_003694725.1 MarR family adhesin repressor NadR -
  C7S01_RS00360 (WHOX_00060) hpaC 60223..60723 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 1054 a.a.        Molecular weight: 115928.16 Da        Isoelectric Point: 9.9140

>NTDB_id=1144382 C7S01_RS00315 WP_115067289.1 52663..55827(-) (pilC) [Neisseria gonorrhoeae strain WHO_X]
MNKTLKRRVFRHTALYAAILMFSHTGGGGAMAQTHKYAIIMNERKQPEVKWDGQYQKSQLREKDRERKFIYTNQKYWSGQ
QSNFISFNNNDTLVSQQSGTAVFGTATYLPPYGKVSGFDTDSLKGRANAAGWIRTTRPGLAGYAYTGIRCGHARDCPKLT
YKTRFSFDNPDLAKTGGRLDRHTESSRENSPIYKLKDYPWLGVSFNLGAEGTAKDGRSSSRLISSFDENNSNSNQNLVYT
TEGRDISLGNWQSESTAVAYYLNAKLHLLDKKGIEDITGKTVRLGVLKPSIDVKTQNTGFAGLLNFWSKWDIKDNGQIPV
KLGLPEVKAGRCTNKPNPNNNTKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTQTDPARPGRHS
LAALNARDIKSREPNFNSRQTVIRLPGGVYRIAPTRDRIVGLNGNDGKNDTFGIYKERLVTPDADEWAKVLLPWTVRYYG
NDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPIVAVDGYLATSANDGMVHLFKRNGTDQRGYEL
KLSYIPGTMPRQYFDNDTSALQDSDLAKELRTFAEKGYVGDRYGVDGGFVLRRITDDQDKQKHFFMFGAMGLGGRGAYAL
DLTKIDSNNLTGVSMFDVQNDKNNNKNDSNRVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKDIVSSDNTTALYVYDLGN
GSGSLIKKIEAPGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSDSNPDKWSVSTIFEGGKPITSAPAVSRLAD
KRVVIFGTGSDLSEEDVVGKDQQYIYGIFDDDKAANNVNASRGVLGSGLLEQHLTQENKTLFLNKRSDGSGSKGWAVKLT
GGRRVTVKPTVVLRTAFVTIRKYKDDGCGAETAILGINTADGGALTPRSARPIVPEANTAVAQYSGHKKTAGGKSVPIGC
MWKNSKTVCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGP
MCGIKRLSWREVFF

Nucleotide


Download         Length: 3165 bp        

>NTDB_id=1144382 C7S01_RS00315 WP_115067289.1 52663..55827(-) (pilC) [Neisseria gonorrhoeae strain WHO_X]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGATGGCGCAAACCCATAAATACGCTATTATCATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGGATGGGC
AATATCAAAAATCACAATTAAGGGAAAAAGACAGGGAACGCAAATTTATCTATACGAACCAGAAATACTGGTCGGGTCAA
CAAAGCAATTTTATCTCATTCAACAATAACGATACCCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCAC
CTACCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATACCGATAGTCTGAAAGGGCGCGCCAATGCCGCCGGTTGGATTC
GTACCACCCGGCCCGGGCTGGCAGGCTACGCCTACACCGGTATCCGTTGCGGACATGCCCGAGACTGTCCCAAACTTACC
TATAAAACCCGATTTTCCTTCGATAATCCCGACTTGGCAAAAACAGGAGGCAGGCTGGATAGGCACACAGAGTCAAGCCG
CGAAAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGCCGAGGGTACCGCCA
AAGATGGCAGATCATCCAGCAGATTGATATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACC
ACGGAAGGCCGCGATATTTCCTTGGGCAACTGGCAGAGCGAAAGTACCGCCGTGGCCTATTATCTGAACGCCAAGCTGCA
CCTGCTGGACAAAAAAGGGATTGAAGATATCACCGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGA
AGACACAAAATACGGGGTTTGCCGGCTTGCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATTCCGGTC
AAGCTCGGCCTGCCGGAAGTCAAAGCCGGGCGCTGCACCAACAAACCGAACCCCAATAATAATACCAAAGCCCCTTCGCC
GGCACTGACCGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCT
ACCCCGGCAGCTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGACCCCGCCCGGCCCGGCCGGCATTCC
CTCGCCGCTTTGAATGCGCGGGATATCAAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCCGGG
CGGCGTGTACCGGATCGCCCCGACTCGCGACAGGATCGTGGGTTTGAATGGCAATGACGGCAAAAACGACACTTTCGGCA
TCTACAAGGAAAGGTTAGTCACACCTGATGCCGACGAGTGGGCAAAAGTGCTGCTGCCTTGGACGGTCCGGTATTACGGT
AATGACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATACCG
CATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGGTCGACG
GGTATTTGGCAACTTCTGCCAACGACGGGATGGTGCACCTGTTTAAAAGAAACGGCACAGACCAACGAGGCTACGAACTG
AAGCTCAGCTACATCCCCGGCACGATGCCGCGCCAATATTTTGATAACGACACTTCCGCTCTCCAAGACTCCGACCTCGC
CAAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCA
TTACAGATGACCAAGACAAGCAAAAACATTTCTTTATGTTTGGTGCGATGGGCCTGGGCGGCAGAGGCGCGTATGCCTTG
GATTTGACCAAAATCGACAGCAACAACCTGACCGGCGTTTCCATGTTTGATGTCCAAAACGACAAAAATAACAATAAGAA
TGACAGTAATCGCGTGAAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCT
TCCTCGCTTCCGGTTATGCGGCTAAAGATATTGTCAGCAGCGATAATACAACCGCGCTGTATGTGTATGATTTGGGAAAC
GGCAGTGGTAGTCTGATTAAAAAAATCGAAGCACCCGGCGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGA
TTTGGACGGCACAGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCGATTCCAATC
CTGATAAATGGTCTGTAAGCACTATTTTCGAAGGCGGGAAGCCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGAC
AAACGCGTGGTTATCTTCGGCACGGGCAGCGATTTGAGTGAAGAGGATGTAGTCGGTAAGGATCAACAATATATTTACGG
TATCTTTGACGACGATAAGGCGGCGAATAATGTAAATGCAAGCCGCGGCGTTTTGGGGAGCGGGCTGCTCGAGCAACACC
TTACTCAGGAAAATAAAACATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGGGCTGGGCGGTGAAATTGACA
GGCGGACGGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATCCGCAAATATAAAGACGACGG
CTGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTG
TGCCGGAAGCCAATACGGCTGTCGCACAATATTCCGGCCATAAGAAAACCGCCGGCGGCAAGTCCGTCCCCATAGGCTGC
ATGTGGAAAAACAGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGCTACCTGGACGAAAA
GAAAACAGACGATTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCC
GCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCG
ATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(535-864)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

70.235

100

0.71

Multiple sequence alignment