Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   C7R99_RS03040 Genome accession   NZ_LT592153
Coordinates   517978..518586 (+) Length   202 a.a.
NCBI ID   WP_106178882.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Z     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512978..523586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R99_RS03005 (WHOZ_00547) - 513419..513751 (+) 333 WP_003687908.1 hypothetical protein -
  C7R99_RS03010 (WHOZ_00548) - 514081..514590 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  C7R99_RS03020 (WHOZ_00549C) - 514822..515403 (-) 582 WP_003690895.1 superoxide dismutase -
  C7R99_RS03030 (WHOZ_00550) dnaB 515567..516973 (+) 1407 WP_003690896.1 replicative DNA helicase -
  C7R99_RS03035 (WHOZ_00551) pilH 517281..517946 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7R99_RS03040 (WHOZ_00552) pilI 517978..518586 (+) 609 WP_106178882.1 type IV pilus modification protein PilV Machinery gene
  C7R99_RS03045 (WHOZ_00553) pilJ 518583..519524 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  C7R99_RS03050 (WHOZ_00554) pilK 519503..520111 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7R99_RS03055 (WHOZ_00555) pilL 520113..520586 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  C7R99_RS03065 (WHOZ_00556C) - 521198..521643 (-) 446 Protein_524 AzlC family ABC transporter permease -
  C7R99_RS03070 (WHOZ_00557) dut 521809..522261 (+) 453 WP_003690909.1 dUTP diphosphatase -
  C7R99_RS03075 (WHOZ_00558) dapC 522339..523526 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22060.06 Da        Isoelectric Point: 4.9985

>NTDB_id=1144348 C7R99_RS03040 WP_106178882.1 517978..518586(+) (pilI) [Neisseria gonorrhoeae strain WHO_Z]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGSYTPTYSGGDFKLNNLISKKDLAKTQLDRFGYELKQALPDAVDIRYAVCKDSSGKAPTLSGGTFSSNCDDKANG
DTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1144348 C7R99_RS03040 WP_106178882.1 517978..518586(+) (pilI) [Neisseria gonorrhoeae strain WHO_Z]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTGGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTGCAGCTGCGGACGGTCGCTTCCGTCAGGGAAGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGGGGTCGTACACCCCCACTTACTCTGGCGGCGATTTCAAGCTTAATAATTTGATAAGCAAGAAGGA
TTTGGCAAAGACCCAGTTGGACAGGTTCGGTTATGAATTGAAACAAGCCTTGCCGGATGCGGTAGATATTCGTTACGCTG
TCTGCAAGGATTCGTCGGGTAAGGCACCGACATTGTCCGGCGGTACTTTTTCTTCAAATTGCGACGATAAGGCAAACGGG
GATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAGCGG
CGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

93.564

100

0.936
  pilV Neisseria gonorrhoeae MS11

93.564

100

0.936
  pilV Neisseria meningitidis 8013

84.466

100

0.861

Multiple sequence alignment