Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7S08_RS10660 Genome accession   NZ_LT592150
Coordinates   1785411..1785899 (+) Length   162 a.a.
NCBI ID   WP_171000882.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_V     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1780411..1790899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S08_RS10600 - 1780997..1781373 (-) 377 Protein_1819 transposase -
  C7S08_RS10615 - 1781682..1781807 (-) 126 Protein_1820 IS110 family transposase -
  C7S08_RS10630 (WHOV_01975) - 1782354..1782806 (+) 453 Protein_1821 pilin -
  C7S08_RS10635 (WHOV_01976) - 1782772..1783116 (+) 345 Protein_1822 pilin -
  C7S08_RS10645 (WHOV_01977) lpxC 1783951..1784874 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  C7S08_RS10660 (WHOV_01978) pilE 1785411..1785899 (+) 489 WP_171000882.1 pilin Machinery gene
  C7S08_RS10670 (WHOV_01979) - 1786267..1787076 (+) 810 WP_115095436.1 opacity family porin -
  C7S08_RS13855 - 1787050..1787208 (-) 159 WP_154235854.1 hypothetical protein -
  C7S08_RS10675 (WHOV_01980C) pilA 1787340..1788593 (-) 1254 WP_106167122.1 signal recognition particle-docking protein FtsY Machinery gene
  C7S08_RS10685 (WHOV_01981) msrAB 1788739..1790307 (+) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  C7S08_RS10690 (WHOV_01982C) - 1790391..1790873 (-) 483 WP_003694396.1 CinA family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17162.13 Da        Isoelectric Point: 9.5282

>NTDB_id=1144326 C7S08_RS10660 WP_171000882.1 1785411..1785899(+) (pilE) [Neisseria gonorrhoeae strain WHO_V]
MTGFNDAAGNDKIDTKHLPSTCRDAASAVCTKHHAPISNTSKKSAVTEYCPNHGKWPANNGDAGVASSPTDIKGKYVQSV
TVAKGVVTAKMKSDGVNKEIQGKKLSLWAKRENGSVKWFCGQPVTRTDKANDDVTDDATAGNNKIDTKHLPSTCRDTSSA
GK

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1144326 C7S08_RS10660 WP_171000882.1 1785411..1785899(+) (pilE) [Neisseria gonorrhoeae strain WHO_V]
ATGACGGGATTTAATGATGCCGCCGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAGTATTGCCCGAATCACG
GCAAATGGCCCGCAAACAACGGTGATGCCGGCGTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTCAAAGCGTT
ACGGTCGCAAAAGGCGTCGTTACCGCCAAAATGAAATCAGACGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCT
GTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACG
TTACCGACGACGCCACCGCCGGCAACAACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACACTTCATCTGCC
GGTAAGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(41-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

74.79

73.457

0.549
  pilE Neisseria gonorrhoeae MS11

67.442

79.63

0.537

Multiple sequence alignment