Detailed information NTG1144322

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C7S08_RS10055
• Genome accession: NZ_LT592150
• Coordinates: 1691265..1692125 (+)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain WHO_V
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1686265..1697125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7S08_RS10035 (WHOV_01871C)	dapD	1686776..1687597 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
C7S08_RS10040 (WHOV_01872C)	pgi	1687807..1689449 (-)	1643	Protein_1726	glucose-6-phosphate isomerase	-
C7S08_RS10050 (WHOV_01873)	pilG	1689959..1691191 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
C7S08_RS10055 (WHOV_01874)	pilD	1691265..1692125 (+)	861	WP_003689814.1	prepilin peptidase	Machinery gene
C7S08_RS10060 (WHOV_01875)	coaE	1692122..1692754 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
C7S08_RS10065 (WHOV_01876)	-	1692747..1692956 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
C7S08_RS10070 (WHOV_01877C)	pilF	1693042..1694718 (-)	1677	WP_003689817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C7S08_RS10085 (WHOV_01879C)	-	1695056..1695502 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
C7S08_RS10090 (WHOV_01880C)	-	1695506..1696480 (-)	975	WP_003689819.1	polyprenyl synthetase family protein	-
C7S08_RS10100 (WHOV_01881)	rplU	1696704..1697012 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=1144322 C7S08_RS10055 WP_003689814.1 1691265..1692125(+) (pilD) [Neisseria gonorrhoeae strain WHO_V]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=1144322 C7S08_RS10055 WP_003689814.1 1691265..1692125(+) (pilD) [Neisseria gonorrhoeae strain WHO_V]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441