Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   C7S08_RS08955 Genome accession   NZ_LT592150
Coordinates   1520655..1521299 (-) Length   214 a.a.
NCBI ID   WP_106167070.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_V     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1515655..1526299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S08_RS08920 (WHOV_01654C) ftsL 1516136..1516399 (-) 264 WP_003701583.1 cell division protein FtsL -
  C7S08_RS08925 (WHOV_01655C) rsmH 1516426..1517382 (-) 957 WP_003689462.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  C7S08_RS08930 (WHOV_01656C) mraZ 1517379..1517834 (-) 456 WP_003689463.1 division/cell wall cluster transcriptional repressor MraZ -
  C7S08_RS08935 (WHOV_01657) - 1518113..1519360 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  C7S08_RS08950 (WHOV_01660C) - 1519801..1520622 (-) 822 WP_003689465.1 undecaprenyl-diphosphate phosphatase -
  C7S08_RS08955 (WHOV_01661C) dsbA1 1520655..1521299 (-) 645 WP_106167070.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  C7S08_RS08960 (WHOV_01662C) ftsN 1521302..1522165 (-) 864 WP_171000879.1 cell division protein FtsN -
  C7S08_RS08965 (WHOV_01663C) comM 1522271..1523767 (-) 1497 WP_047917830.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C7S08_RS08970 (WHOV_01664C) - 1523781..1524101 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  C7S08_RS08980 (WHOV_01665) putP 1524589..1526115 (+) 1527 WP_003689473.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24001.10 Da        Isoelectric Point: 9.9225

>NTDB_id=1144317 C7S08_RS08955 WP_106167070.1 1520655..1521299(-) (dsbA1) [Neisseria gonorrhoeae strain WHO_V]
MKFKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQPGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDTYLRTEH
VVWRPEMLGLARMAAAVKLSGLKYQANSAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAVVALKMQK
LTEQYGIDGTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1144317 C7S08_RS08955 WP_106167070.1 1520655..1521299(-) (dsbA1) [Neisseria gonorrhoeae strain WHO_V]
ATGAAGTTTAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGCCGGGAAAAATTGAGGTTTTGGAATTTTTCGGCTATTTTTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATACTTATCTGCGGACGGAGCAC
GTGGTCTGGCGGCCTGAAATGCTCGGTCTGGCAAGAATGGCTGCTGCGGTCAAGCTGTCGGGTTTGAAATATCAGGCAAA
CTCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGTTTGGAAAACAGGGCTGTTGCCGGAAAATGGGCTTTATCTC
AAAAAGGTTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGTCGTCGCATTAAAAATGCAGAAA
CTGACGGAACAATACGGTATTGACGGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAATGGCTT
TGATGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

DSBA-like thioredoxin domain (DSBA)

(86-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

52.688

86.916

0.458

Multiple sequence alignment