Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   C7S08_RS03150 Genome accession   NZ_LT592150
Coordinates   515616..516278 (+) Length   220 a.a.
NCBI ID   WP_106167105.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_V     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510616..521278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S08_RS03110 (WHOV_00538C) cysT 510736..511574 (-) 839 Protein_512 sulfate ABC transporter permease subunit CysT -
  C7S08_RS03115 (WHOV_00539) - 511760..512092 (+) 333 WP_003687908.1 hypothetical protein -
  C7S08_RS03120 (WHOV_00540) - 512419..512928 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  C7S08_RS03130 (WHOV_00541C) - 513158..513739 (-) 582 WP_003690895.1 superoxide dismutase -
  C7S08_RS03140 (WHOV_00542) dnaB 513902..515308 (+) 1407 WP_071200491.1 replicative DNA helicase -
  C7S08_RS03150 (WHOV_00543) pilH 515616..516278 (+) 663 WP_106167105.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7S08_RS03155 (WHOV_00544) pilI 516310..516924 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  C7S08_RS03160 (WHOV_00545) pilJ 516921..517880 (+) 960 WP_050169726.1 PilW family protein Machinery gene
  C7S08_RS03165 (WHOV_00546) pilK 517859..518470 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7S08_RS03170 (WHOV_00547) pilL 518472..518945 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  C7S08_RS03175 (WHOV_00548C) - 519015..519323 (-) 309 WP_003706588.1 AzlD family protein -
  C7S08_RS03180 - 519320..520031 (-) 712 Protein_523 AzlC family ABC transporter permease -
  C7S08_RS03185 (WHOV_00551) dut 520197..520649 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24610.03 Da        Isoelectric Point: 9.8191

>NTDB_id=1144300 C7S08_RS03150 WP_106167105.1 515616..516278(+) (pilH) [Neisseria gonorrhoeae strain WHO_V]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRRVVLNDTDDSRINYAFNHIAFGQTRSTADRVVWTFNQNGTFGYLPD
QNLKNNSKFVYSDGYIQIVLTDARAVSDADRKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1144300 C7S08_RS03150 WP_106167105.1 515616..516278(+) (pilH) [Neisseria gonorrhoeae strain WHO_V]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGAGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACGCCTTCAATCATATCG
CTTTCGGTCAAACACGGTCGACTGCCGATCGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

94.091

100

0.941

Multiple sequence alignment