Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | C7S08_RS03160 | Genome accession | NZ_LT592150 |
| Coordinates | 516921..517880 (+) | Length | 319 a.a. |
| NCBI ID | WP_050169726.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain WHO_V | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 511921..522880
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7S08_RS03120 (WHOV_00540) | - | 512419..512928 (+) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| C7S08_RS03130 (WHOV_00541C) | - | 513158..513739 (-) | 582 | WP_003690895.1 | superoxide dismutase | - |
| C7S08_RS03140 (WHOV_00542) | dnaB | 513902..515308 (+) | 1407 | WP_071200491.1 | replicative DNA helicase | - |
| C7S08_RS03150 (WHOV_00543) | pilH | 515616..516278 (+) | 663 | WP_106167105.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| C7S08_RS03155 (WHOV_00544) | pilI | 516310..516924 (+) | 615 | WP_012503479.1 | type IV pilus modification protein PilV | Machinery gene |
| C7S08_RS03160 (WHOV_00545) | pilJ | 516921..517880 (+) | 960 | WP_050169726.1 | PilW family protein | Machinery gene |
| C7S08_RS03165 (WHOV_00546) | pilK | 517859..518470 (+) | 612 | WP_012503481.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| C7S08_RS03170 (WHOV_00547) | pilL | 518472..518945 (+) | 474 | WP_012503482.1 | PilX family type IV pilin | Machinery gene |
| C7S08_RS03175 (WHOV_00548C) | - | 519015..519323 (-) | 309 | WP_003706588.1 | AzlD family protein | - |
| C7S08_RS03180 | - | 519320..520031 (-) | 712 | Protein_523 | AzlC family ABC transporter permease | - |
| C7S08_RS03185 (WHOV_00551) | dut | 520197..520649 (+) | 453 | WP_003701071.1 | dUTP diphosphatase | - |
| C7S08_RS03190 (WHOV_00552) | dapC | 520721..521908 (+) | 1188 | WP_003701073.1 | succinyldiaminopimelate transaminase | - |
| C7S08_RS03195 (WHOV_00553) | yaaA | 522064..522843 (+) | 780 | WP_003687925.1 | peroxide stress protein YaaA | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 35245.19 Da Isoelectric Point: 9.3781
>NTDB_id=1144302 C7S08_RS03160 WP_050169726.1 516921..517880(+) (pilJ) [Neisseria gonorrhoeae strain WHO_V]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESLNIRYQGFTHRPNALIFQYGIDDVNASADTTV
VSSCAAISKPDKQILNLEDVKKELKIVGQGKEQNGNIARQRHVVNAYAVGRFGNEEGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESLNIRYQGFTHRPNALIFQYGIDDVNASADTTV
VSSCAAISKPDKQILNLEDVKKELKIVGQGKEQNGNIARQRHVVNAYAVGRFGNEEGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
Nucleotide
Download Length: 960 bp
>NTDB_id=1144302 C7S08_RS03160 WP_050169726.1 516921..517880(+) (pilJ) [Neisseria gonorrhoeae strain WHO_V]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTTTAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGACAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGT
GGGTCAGGGTAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATGAGGAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTT
CTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTTTAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGACAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGT
GGGTCAGGGTAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATGAGGAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTT
CTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
86.52 |
100 |
0.865 |