Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   WHOZ_RS12340 Genome accession   NZ_LT592146
Coordinates   2060392..2060709 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO O     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2055392..2065709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHOZ_RS13775 - 2055427..2055570 (-) 144 WP_047925941.1 hypothetical protein -
  WHOZ_RS12300 (WHOO_02266C) - 2056114..2056511 (-) 398 Protein_2078 pilin -
  WHOZ_RS12310 (WHOO_02267C) lpxC 2056639..2057562 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  WHOZ_RS12315 (WHOO_02268C) pilE 2058276..2058695 (-) 420 WP_115304478.1 pilin Machinery gene
  WHOZ_RS12325 (WHOO_02269C) - 2058791..2059228 (-) 438 Protein_2081 pilin -
  WHOZ_RS14530 (WHOO_02270C) - 2059755..2060468 (-) 714 WP_106350327.1 pilin -
  WHOZ_RS12340 (WHOO_02271C) pilE 2060392..2060709 (-) 318 WP_003697861.1 pilin Machinery gene
  WHOZ_RS12360 (WHOO_02273C) - 2061294..2061983 (-) 690 WP_003687013.1 SprT family zinc-dependent metalloprotease -
  WHOZ_RS12365 (WHOO_02274C) - 2061980..2062723 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  WHOZ_RS12370 (WHOO_02275C) gmhB 2062753..2063316 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  WHOZ_RS12375 (WHOO_02276) - 2063459..2065111 (+) 1653 WP_047926024.1 LTA synthase family protein -
  WHOZ_RS14380 (WHOO_02277C) - 2065178..2065693 (-) 516 WP_229690015.1 glycosyltransferase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=1144285 WHOZ_RS12340 WP_003697861.1 2060392..2060709(-) (pilE) [Neisseria gonorrhoeae strain WHO O]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1144285 WHOZ_RS12340 WP_003697861.1 2060392..2060709(-) (pilE) [Neisseria gonorrhoeae strain WHO O]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41

Multiple sequence alignment