Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   WHOZ_RS12160 Genome accession   NZ_LT592146
Coordinates   2033867..2034292 (-) Length   141 a.a.
NCBI ID   WP_050161409.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO O     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2028867..2039292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHOZ_RS12115 (WHOO_02237C) - 2030109..2030471 (-) 363 Protein_2051 pilin -
  WHOZ_RS12120 (WHOO_02238C) - 2030437..2030889 (-) 453 Protein_2052 pilin -
  WHOZ_RS14365 - 2031294..2031703 (-) 410 Protein_2053 pilin -
  WHOZ_RS13770 (WHOO_02240C) - 2031743..2032135 (-) 393 Protein_2054 pilin -
  WHOZ_RS12145 (WHOO_02241C) - 2032517..2032966 (-) 450 Protein_2055 pilin -
  WHOZ_RS12155 (WHOO_02242C) - 2033458..2033814 (-) 357 Protein_2056 pilin -
  WHOZ_RS12160 (WHOO_02243C) pilE 2033867..2034292 (-) 426 WP_050161409.1 pilin Machinery gene
  WHOZ_RS12165 (WHOO_02244) - 2034338..2034652 (+) 315 Protein_2058 NAD(P)-dependent oxidoreductase -
  WHOZ_RS12170 (WHOO_02245C) metG 2034727..2036781 (-) 2055 WP_047919415.1 methionine--tRNA ligase -
  WHOZ_RS12175 (WHOO_02246C) glmS 2036897..2038735 (-) 1839 WP_047919413.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15292.38 Da        Isoelectric Point: 9.6170

>NTDB_id=1144282 WHOZ_RS12160 WP_050161409.1 2033867..2034292(-) (pilE) [Neisseria gonorrhoeae strain WHO O]
MASASTIKGKYVQKVEVAKGVVTAQMASTGVNKEIKNKKLSLWARREAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKIE
TKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIDTKHLPSTCRDKSSAE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1144282 WHOZ_RS12160 WP_050161409.1 2033867..2034292(-) (pilE) [Neisseria gonorrhoeae strain WHO O]
GTGGCATCCGCTTCAACAATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTCACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGTCACCGGCAACGACAAAATCGAA
ACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCT
GCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

78.652

63.121

0.496
  pilE Neisseria gonorrhoeae MS11

69.88

58.865

0.411

Multiple sequence alignment