Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CJH_RS03165 Genome accession   NZ_CP006851
Coordinates   602147..602920 (+) Length   257 a.a.
NCBI ID   WP_002873646.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni F38011     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 597147..607920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJH_RS03150 (CJH_03195) - 597996..599930 (-) 1935 WP_002918407.1 ribonuclease R family protein -
  CJH_RS03155 (CJH_03200) ilvC 600049..601071 (+) 1023 WP_002873648.1 ketol-acid reductoisomerase -
  CJH_RS03160 (CJH_03205) - 601075..602157 (+) 1083 WP_002873647.1 divergent polysaccharide deacetylase family protein -
  CJH_RS03165 (CJH_03210) dprA 602147..602920 (+) 774 WP_002873646.1 DNA-processing protein DprA Machinery gene
  CJH_RS03170 (CJH_03215) ruvX 602917..603300 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  CJH_RS03175 (CJH_03220) - 603329..604168 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJH_RS03180 (CJH_03225) msrA 604344..604841 (-) 498 WP_002874288.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJH_RS03185 (CJH_03230) ppa 604882..605400 (-) 519 WP_002852138.1 inorganic diphosphatase -
  CJH_RS03190 (CJH_03235) adk 605410..605988 (-) 579 WP_002868428.1 adenylate kinase -
  CJH_RS03195 (CJH_03240) aspS 605985..607736 (-) 1752 WP_041160066.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28846.70 Da        Isoelectric Point: 7.0853

>NTDB_id=114426 CJH_RS03165 WP_002873646.1 602147..602920(+) (dprA) [Campylobacter jejuni subsp. jejuni F38011]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTATNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=114426 CJH_RS03165 WP_002873646.1 602147..602920(+) (dprA) [Campylobacter jejuni subsp. jejuni F38011]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTGCACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGCATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTGC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGAAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.611

100

0.996
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment