Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7S00_RS08610 Genome accession   NZ_LT591901
Coordinates   1490811..1491242 (+) Length   143 a.a.
NCBI ID   WP_172616924.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO L     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1485811..1496242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S00_RS08590 (WHOL_01618) metG 1487514..1489568 (+) 2055 WP_010359662.1 methionine--tRNA ligase -
  C7S00_RS08595 (WHOL_01619C) - 1489643..1489951 (-) 309 Protein_1482 NAD(P)-dependent oxidoreductase -
  C7S00_RS13850 - 1489955..1490290 (+) 336 Protein_1483 pilin -
  C7S00_RS08605 (WHOL_01621) pilE 1490371..1490739 (+) 369 WP_047921230.1 pilin Machinery gene
  C7S00_RS08610 (WHOL_01622) pilE 1490811..1491242 (+) 432 WP_172616924.1 pilin Machinery gene
  C7S00_RS08625 (WHOL_01623) - 1491625..1491948 (+) 324 Protein_1486 pilin -
  C7S00_RS13855 - 1491975..1492399 (+) 425 Protein_1487 pilin -
  C7S00_RS13865 - 1492514..1492882 (+) 369 Protein_1488 pilin -
  C7S00_RS08640 (WHOL_01625C) thiC 1493371..1495272 (-) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15211.98 Da        Isoelectric Point: 8.4720

>NTDB_id=1144076 C7S00_RS08610 WP_172616924.1 1490811..1491242(+) (pilE) [Neisseria gonorrhoeae strain WHO L]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGKWPADNGAAGVASASTIKGKYVQKVEVTNGVVTATMNSSGVNKEIQ
GKKLSLWAKRQDGSVKWFCGQPVTRTEANAKAGTDDVAKDDAAGKKIDTKHLPSTCRDEPTAT

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1144076 C7S00_RS08610 WP_172616924.1 1490811..1491242(+) (pilE) [Neisseria gonorrhoeae strain WHO L]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCAAATGGCCCGCCGACAACGGCGCTGCCGGCGTGGCATCCGCTTCAACAATCAAAGGCA
AATATGTTCAGAAAGTTGAAGTCACAAACGGCGTCGTCACCGCCACAATGAATTCAAGCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGA
AGCCAACGCCAAAGCCGGCACCGACGACGTCGCCAAAGACGACGCCGCCGGCAAAAAAATCGACACCAAGCACCTGCCGT
CAACCTGCCGCGATGAACCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.917

100

0.734
  pilE Neisseria gonorrhoeae MS11

67.376

98.601

0.664

Multiple sequence alignment