Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7S07_RS10345 Genome accession   NZ_LT591898
Coordinates   1753810..1754196 (+) Length   128 a.a.
NCBI ID   WP_269472850.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1748810..1759196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S07_RS10315 (WHOG_01923) metG 1748931..1750985 (+) 2055 WP_047951312.1 methionine--tRNA ligase -
  C7S07_RS10320 (WHOG_01924C) - 1751060..1751374 (-) 315 Protein_1764 NAD(P)-dependent oxidoreductase -
  C7S07_RS10325 - 1751372..1751710 (+) 339 Protein_1765 pilin -
  C7S07_RS10330 (WHOG_01926) - 1752174..1752587 (+) 414 Protein_1766 pilin -
  C7S07_RS10335 (WHOG_01927) - 1752569..1752907 (+) 339 Protein_1767 pilin -
  C7S07_RS10340 (WHOG_01928) - 1753069..1753458 (+) 390 Protein_1768 pilin -
  C7S07_RS10345 (WHOG_01929) pilE 1753810..1754196 (+) 387 WP_269472850.1 pilin Machinery gene
  C7S07_RS10350 (WHOG_01930C) thiC 1754638..1756539 (-) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  C7S07_RS10365 (WHOG_01933) - 1757137..1758012 (+) 876 WP_003686971.1 NUDIX hydrolase -
  C7S07_RS10370 (WHOG_01934) - 1758021..1758962 (+) 942 WP_003686969.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 13877.68 Da        Isoelectric Point: 10.1330

>NTDB_id=1144037 C7S07_RS10345 WP_269472850.1 1753810..1754196(+) (pilE) [Neisseria gonorrhoeae strain WHO G]
MPAGILKHRPKKSAVAGYCPNHGKWPENNTSAGVASPPSDIKGKYVKEVEVKNGVVTATMASSNVNKEIKDKRLSLWAKR
ENGSVKWFCGQPVKRTANNNDDVAKDGTDKIETKHLPSTCRDESTAGT

Nucleotide


Download         Length: 387 bp        

>NTDB_id=1144037 C7S07_RS10345 WP_269472850.1 1753810..1754196(+) (pilE) [Neisseria gonorrhoeae strain WHO G]
TTGCCCGCCGGAATATTAAAACACCGCCCAAAAAAATCAGCCGTTGCCGGGTATTGCCCGAATCACGGCAAATGGCCGGA
AAACAACACTTCTGCCGGCGTGGCATCCCCCCCCTCCGACATCAAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACG
GCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAATCAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGT
GAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCACCGCCAACAACAACGACGACGTCGCCAAAGACGG
CACCGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTGATGAATCAACTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

72.131

95.313

0.687
  pilE Neisseria gonorrhoeae strain FA1090

68.293

96.094

0.656

Multiple sequence alignment