Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7S05_RS12855 Genome accession   NZ_LT591897
Coordinates   2182932..2183456 (-) Length   174 a.a.
NCBI ID   WP_106278765.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO F     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2177932..2188456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S05_RS12810 (WHOF_02405C) - 2178084..2178395 (-) 312 WP_003694611.1 hypothetical protein -
  C7S05_RS12815 (WHOF_02406C) - 2178407..2179621 (-) 1215 WP_003694614.1 replication initiation factor domain-containing protein -
  C7S05_RS12830 (WHOF_02407C) - 2180322..2180675 (-) 354 Protein_2234 pilin -
  C7S05_RS12835 (WHOF_02408C) pilE 2180657..2181088 (-) 432 WP_106278828.1 pilin Machinery gene
  C7S05_RS12840 (WHOF_02409C) - 2181604..2181948 (-) 345 Protein_2236 pilin -
  C7S05_RS12845 (WHOF_02410C) - 2182152..2182502 (-) 351 Protein_2237 pilin -
  C7S05_RS14890 (WHOF_02411C) - 2182529..2182999 (-) 471 WP_144996902.1 pilin -
  C7S05_RS12855 (WHOF_02412C) pilE 2182932..2183456 (-) 525 WP_106278765.1 pilin Machinery gene
  C7S05_RS12860 (WHOF_02413C) - 2183595..2183948 (-) 354 Protein_2240 pilin -
  C7S05_RS12865 (WHOF_02414C) - 2183989..2184183 (-) 195 Protein_2241 pilin -
  C7S05_RS12880 (WHOF_02416C) - 2184768..2185457 (-) 690 WP_003705080.1 SprT family zinc-dependent metalloprotease -
  C7S05_RS12885 (WHOF_02417C) - 2185454..2186197 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  C7S05_RS12890 (WHOF_02418C) gmhB 2186227..2186790 (-) 564 WP_047919691.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18864.05 Da        Isoelectric Point: 8.2770

>NTDB_id=1143995 C7S05_RS12855 WP_106278765.1 2182932..2183456(-) (pilE) [Neisseria gonorrhoeae strain WHO F]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGKWPEDNDKAGVASPPTDIKGKYVQSVTVTNGVVTAQMASTGVNKEI
QGKKLSLWAKREDGSVKWFCGQPVQRDNAADTKDDTVTAANDAGNGGKIDTKHLPSTCRDESSLPGIARITANGRKTTLL
PAWHPPHRHQRQIC

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1143995 C7S05_RS12855 WP_106278765.1 2182932..2183456(-) (pilE) [Neisseria gonorrhoeae strain WHO F]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCCCCACCGACATCAAAG
GCAAATATGTTCAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATC
CAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCGA
CAACGCCGCCGACACCAAAGACGACACCGTCACCGCCGCCAACGACGCCGGCAACGGCGGCAAAATCGACACCAAGCACC
TGCCGTCAACCTGCCGCGATGAATCATCGTTGCCGGGTATTGCCCGAATCACGGCGAATGGCCGAAAGACAACGCTTCTG
CCGGCGTGGCATCCCCCCCACCGACATCAAAGGCAAATATGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

71.918

83.908

0.603
  pilE Neisseria gonorrhoeae MS11

68.75

82.759

0.569

Multiple sequence alignment