Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BN6763_RS10010 Genome accession   NZ_LT571449
Coordinates   1953691..1954086 (-) Length   131 a.a.
NCBI ID   WP_001829977.1    Uniprot ID   A0A4Q9W3V8
Organism   Staphylococcus epidermidis isolate BPH0662     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1948691..1959086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN6763_RS09985 thiE 1949431..1950069 (-) 639 WP_002505076.1 thiamine phosphate synthase -
  BN6763_RS09990 thiM 1950075..1950863 (-) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  BN6763_RS09995 thiD 1950856..1951677 (-) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  BN6763_RS10000 tenA 1951670..1952359 (-) 690 WP_001829894.1 thiaminase II -
  BN6763_RS10005 - 1952644..1953303 (-) 660 WP_001829904.1 transglycosylase family protein -
  BN6763_RS10010 ssb 1953691..1954086 (-) 396 WP_001829977.1 single-stranded DNA-binding protein Machinery gene
  BN6763_RS10015 - 1954277..1954717 (+) 441 WP_001829935.1 YwpF-like family protein -
  BN6763_RS10020 fabZ 1955035..1955472 (-) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BN6763_RS10025 murA 1955506..1956771 (-) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BN6763_RS10030 - 1956881..1957114 (-) 234 WP_002456242.1 DUF1146 family protein -
  BN6763_RS10035 - 1957263..1957667 (-) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15158.08 Da        Isoelectric Point: 5.2661

>NTDB_id=1143869 BN6763_RS10010 WP_001829977.1 1953691..1954086(-) (ssb) [Staphylococcus epidermidis isolate BPH0662]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1143869 BN6763_RS10010 WP_001829977.1 1953691..1954086(-) (ssb) [Staphylococcus epidermidis isolate BPH0662]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9W3V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725

Multiple sequence alignment