Detailed information    

insolico Bioinformatically predicted

Overview


Name   recB   Type   Machinery gene
Locus tag   A8Q77_RS03345 Genome accession   NZ_LT571436
Coordinates   743924..747544 (-) Length   1206 a.a.
NCBI ID   WP_064130430.1    Uniprot ID   -
Organism   Neisseria weaveri strain NCTC13585     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 731733..803562 743924..747544 within 0


Gene organization within MGE regions


Location: 731733..803562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8Q77_RS03300 (SAMEA3174300_00657) efp 731787..732347 (-) 561 WP_004283334.1 elongation factor P -
  A8Q77_RS03305 (SAMEA3174300_00658) earP 732396..733553 (-) 1158 WP_064130427.1 elongation factor P maturation arginine rhamnosyltransferase EarP -
  A8Q77_RS03310 (SAMEA3174300_00659) gyrA 734176..736923 (+) 2748 WP_004283331.1 DNA gyrase subunit A -
  A8Q77_RS03315 - 736934..737278 (+) 345 WP_064130428.1 hypothetical protein -
  A8Q77_RS03320 (SAMEA3174300_00660) dld 737367..739058 (+) 1692 WP_004285270.1 D-lactate dehydrogenase -
  A8Q77_RS03325 (SAMEA3174300_00661) pilU 739135..740268 (-) 1134 WP_004285269.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  A8Q77_RS03330 (SAMEA3174300_00662) - 740442..741161 (+) 720 WP_004285268.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  A8Q77_RS03335 (SAMEA3174300_00663) recD 741217..742974 (+) 1758 WP_064130429.1 exodeoxyribonuclease V subunit alpha Machinery gene
  A8Q77_RS03340 (SAMEA3174300_00664) ung 743115..743774 (+) 660 WP_004285265.1 uracil-DNA glycosylase -
  A8Q77_RS03345 (SAMEA3174300_00665) recB 743924..747544 (-) 3621 WP_064130430.1 exodeoxyribonuclease V subunit beta Machinery gene
  A8Q77_RS03350 (SAMEA3174300_00666) - 747895..749658 (+) 1764 WP_064130431.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
  A8Q77_RS03355 (SAMEA3174300_00667) - 749812..758379 (+) 8568 WP_064130432.1 hemagglutinin repeat-containing protein -
  A8Q77_RS03360 (SAMEA3174300_00668) - 758385..758672 (+) 288 WP_004285342.1 barstar family protein -
  A8Q77_RS10735 - 758734..758976 (+) 243 WP_197671602.1 hypothetical protein -
  A8Q77_RS03365 (SAMEA3174300_00669) - 759207..759563 (+) 357 WP_064130433.1 hypothetical protein -
  A8Q77_RS03370 (SAMEA3174300_00670) - 759864..760640 (+) 777 WP_156503404.1 VENN motif pre-toxin domain-containing protein -
  A8Q77_RS03375 (SAMEA3174300_00671) - 760637..760852 (+) 216 WP_064130435.1 hypothetical protein -
  A8Q77_RS03380 (SAMEA3174300_00672) - 760932..762131 (+) 1200 WP_172795924.1 VENN motif pre-toxin domain-containing protein -
  A8Q77_RS03385 (SAMEA3174300_00673) - 762165..762692 (+) 528 WP_107726135.1 Imm42 family immunity protein -
  A8Q77_RS10885 - 763020..763244 (+) 225 WP_004283050.1 hypothetical protein -
  A8Q77_RS03395 (SAMEA3174300_00674) - 763262..763756 (+) 495 WP_004283048.1 immunity 42 family protein -
  A8Q77_RS03400 (SAMEA3174300_00675) - 763993..765618 (+) 1626 WP_064130437.1 VENN motif pre-toxin domain-containing protein -
  A8Q77_RS03405 (SAMEA3174300_00676) - 765639..766142 (+) 504 WP_040670001.1 hypothetical protein -
  A8Q77_RS03410 (SAMEA3174300_00677) - 766265..766708 (+) 444 WP_004284764.1 hypothetical protein -
  A8Q77_RS03415 (SAMEA3174300_00678) - 766708..767061 (+) 354 WP_082887994.1 DUF3969 family protein -
  A8Q77_RS03420 (SAMEA3174300_00679) - 767164..768477 (+) 1314 WP_172795925.1 VENN motif pre-toxin domain-containing protein -
  A8Q77_RS03425 (SAMEA3174300_00680) - 768474..768914 (+) 441 WP_107855378.1 Imm42 family immunity protein -
  A8Q77_RS03430 (SAMEA3174300_00681) - 769046..769699 (-) 654 WP_064130439.1 IS1595 family transposase -
  A8Q77_RS03435 - 769714..770040 (+) 327 WP_036494199.1 hypothetical protein -
  A8Q77_RS10535 - 770811..771053 (+) 243 WP_156503406.1 hypothetical protein -
  A8Q77_RS03445 (SAMEA3174300_00682) - 771034..771471 (+) 438 WP_036494200.1 hypothetical protein -
  A8Q77_RS10740 (SAMEA3174300_00683) - 771660..773078 (+) 1419 WP_197671603.1 VENN motif pre-toxin domain-containing protein -
  A8Q77_RS03455 (SAMEA3174300_00684) - 773078..773530 (+) 453 WP_004283042.1 hypothetical protein -
  A8Q77_RS10280 - 773549..773752 (-) 204 Protein_671 IS1595 family transposase -
  A8Q77_RS03460 (SAMEA3174300_00685) - 774117..777434 (+) 3318 WP_231987957.1 hemagglutinin repeat-containing protein -
  A8Q77_RS03465 (SAMEA3174300_00686) - 777457..777915 (+) 459 WP_064130442.1 hypothetical protein -
  A8Q77_RS10540 (SAMEA3174300_00687) - 777945..778649 (+) 705 WP_064130443.1 S-layer family protein -
  A8Q77_RS10290 - 778615..779274 (-) 660 Protein_675 transposase -
  A8Q77_RS03485 (SAMEA3174300_00690) - 779701..780438 (+) 738 WP_004284756.1 pirin family protein -
  A8Q77_RS03490 (SAMEA3174300_00691) - 780530..781138 (+) 609 WP_004284755.1 nitroreductase family protein -
  A8Q77_RS03495 (SAMEA3174300_00692) - 781269..781952 (+) 684 WP_004284753.1 hydrolase -
  A8Q77_RS03500 (SAMEA3174300_00693) - 782039..782260 (+) 222 WP_004284751.1 DUF1427 family protein -
  A8Q77_RS03505 (SAMEA3174300_00694) - 782261..784153 (+) 1893 WP_064130445.1 amidohydrolase -
  A8Q77_RS03510 (SAMEA3174300_00695) - 784314..785213 (+) 900 WP_064130446.1 pirin family protein -
  A8Q77_RS03515 (SAMEA3174300_00696) - 785554..787161 (+) 1608 Protein_682 MFS transporter -
  A8Q77_RS03520 (SAMEA3174300_00697) - 787427..787990 (-) 564 WP_064130448.1 YceI family protein -
  A8Q77_RS03525 (SAMEA3174300_00698) - 788180..789082 (-) 903 WP_036494230.1 LysR family transcriptional regulator -
  A8Q77_RS03530 (SAMEA3174300_00699) trmB 789352..790053 (+) 702 WP_064130449.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  A8Q77_RS03535 (SAMEA3174300_00700) - 790161..790967 (-) 807 WP_064130450.1 IS481 family transposase -
  A8Q77_RS03540 (SAMEA3174300_00701) - 791066..791479 (+) 414 WP_004284735.1 DUF596 domain-containing protein -
  A8Q77_RS03545 (SAMEA3174300_00702) - 791625..792554 (+) 930 WP_004284733.1 DUF637 domain-containing protein -
  A8Q77_RS03550 - 792551..792799 (+) 249 WP_156503407.1 hypothetical protein -
  A8Q77_RS03555 (SAMEA3174300_00703) - 793085..793408 (+) 324 WP_040669974.1 hypothetical protein -
  A8Q77_RS03565 (SAMEA3174300_00704) serS 793887..795182 (+) 1296 WP_064130452.1 serine--tRNA ligase -
  A8Q77_RS03570 (SAMEA3174300_00705) - 795266..795892 (+) 627 WP_064130453.1 LysE/ArgO family amino acid transporter -
  A8Q77_RS03575 (SAMEA3174300_00706) - 795976..796395 (-) 420 WP_004284722.1 hypothetical protein -
  A8Q77_RS03580 (SAMEA3174300_00707) holA 796485..797489 (-) 1005 WP_004284721.1 DNA polymerase III subunit delta -
  A8Q77_RS03585 (SAMEA3174300_00708) lptE 797489..797968 (-) 480 WP_064130454.1 LPS assembly lipoprotein LptE -
  A8Q77_RS03590 (SAMEA3174300_00709) gatB 798043..799470 (-) 1428 WP_064130455.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  A8Q77_RS10295 (SAMEA3174300_00710) - 799484..800110 (-) 627 WP_081463204.1 MutH/Sau3AI family endonuclease -
  A8Q77_RS03600 (SAMEA3174300_00711) - 800100..800918 (-) 819 WP_004284717.1 DNA-methyltransferase -
  A8Q77_RS03605 (SAMEA3174300_00712) - 800908..801726 (-) 819 WP_004284716.1 DNA adenine methylase -
  A8Q77_RS03610 (SAMEA3174300_00713) - 801732..801938 (-) 207 WP_064130456.1 hypothetical protein -
  A8Q77_RS03615 (SAMEA3174300_00714) gatA 802034..803488 (-) 1455 WP_004284711.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence


Protein


Download         Length: 1206 a.a.        Molecular weight: 137100.93 Da        Isoelectric Point: 5.1808

>NTDB_id=1143795 A8Q77_RS03345 WP_064130430.1 743924..747544(-) (recB) [Neisseria weaveri strain NCTC13585]
MHTATPFTPLTIDIQNTSLIEASAGTGKTYGIAALFARLVLLEKMPVESILVVTFTKDATAELKTRLRARLDNLLHILEK
VPDAAENSDGLMAYCADKHPKDAFIPALLSQALKQEAQAKLILRLKAAIVQFDNAAIFTIHGFCQRLLRDYAFLCQVPFD
MELSSSGAIERFLTPAQDFWRTRVATDPVLANLAFENKATPRSVLEELIPFIGRPYLKPATAENRLADIQEAVETVWQTV
RSRLPELEETFWKIHPGLNGSSYRQKNFTEQFAEWKKSAERNTPPGYSKYFEKFDQGALTKGLKKGVIADEQAFAELAVL
AELGEHILVLEEAEEEAFIHLKLDLLDYLKQNLAEQKKSRKERSFDDLLTDVHHALTATPYGEKLAQTISENWRVALIDE
FQDTDPLQYEIFSTAFIRQGTPLFLVGDPKQAIYKFRGADIYAYLKAARDAEHHYTLATNHRSHQELVGNINRLFMQKTH
PFVLNDIRYPEVEAARKEGRLNPKQASFRVRWLIDENGDTPAQRDPLRRLSARYCADEIADALNRAAKGEYRLGDRALEA
GDIAVLVRKGEQGRLIARELKKRNIQSVIQSRESVFAAEETLAIAALIRFWLEPQKTEFLRFVLGSVLFQYTADQLYELN
QNEQLLSEWTDAAAEALEIWQQRGFYAAIQYFSTRYRIESRLLAGKNERSLTNFNQVLELLAEEDEESHSPFSLLQWLQN
EINAAEKGNQDKEKTLRLESDEELVKIVTIHASKGLQYPLVYCPFAWEAQKNQPEGWQILQRSDQTAELCYASQLSEDDK
QQLNEENLGEDLRLLYVALTRAEEQVTVYAAYCNDTPNNSLAYLLNGNAETRPDEVEAAYSALEKSNRPSLLKQDWQRFL
GIPEPESGCEWLDSVPTPSGYTPDHNRQTAYHATALPKRSFEFIKHTSFTALSSQTSTIQEENREELQPAIDPAETELTV
RPSEISAACEVSPDSIHHFPRGTKAGVCLHEMLEHLDFSKPAAVQSEQTAACLQKYGFDASWLPSVETMLEQTRLSKLFD
NYALADIPPKKRLPEMAFTLYMEQFDLAQLRRWFERSTLPGACLAAAQHLDFQTVRGFLNGFIDMVCQYSDGHVCIIDYK
SNHLGDNASAYTRRAMDEAVAGHHYYLQALIYSIAVARHFQVRGRPLHGISVRYLFLRGLDGTDNGIWQWNIDTADLQEW
LQAPAQ

Nucleotide


Download         Length: 3621 bp        

>NTDB_id=1143795 A8Q77_RS03345 WP_064130430.1 743924..747544(-) (recB) [Neisseria weaveri strain NCTC13585]
ATGCATACCGCTACTCCGTTTACGCCGCTGACCATCGACATTCAAAACACCAGCTTGATTGAGGCCTCGGCCGGTACCGG
TAAAACCTACGGCATTGCCGCACTGTTTGCACGCTTGGTTTTATTGGAAAAAATGCCGGTTGAAAGCATTCTGGTCGTAA
CCTTTACCAAAGACGCCACTGCGGAATTGAAAACCCGTCTGCGCGCCCGTTTGGACAACCTGCTGCATATTTTGGAAAAA
GTCCCCGATGCCGCAGAAAATTCAGACGGCCTAATGGCTTACTGTGCGGACAAACACCCCAAAGATGCCTTTATTCCCGC
GCTGCTTAGCCAAGCGTTAAAGCAAGAAGCGCAAGCCAAGCTCATTCTGCGTTTGAAAGCGGCCATCGTCCAATTCGACA
ATGCCGCCATTTTCACCATTCACGGCTTCTGCCAACGGCTGCTGCGCGATTACGCTTTTCTTTGCCAAGTACCGTTCGAT
ATGGAATTGTCTTCAAGCGGCGCCATCGAACGCTTTCTGACACCGGCTCAGGATTTTTGGCGCACCCGCGTGGCTACCGA
CCCTGTGTTGGCAAACTTGGCATTTGAAAACAAAGCCACACCGCGAAGCGTATTGGAGGAGCTGATTCCGTTTATCGGCC
GCCCCTACCTGAAACCCGCAACGGCAGAAAACCGCCTGGCCGATATCCAAGAAGCTGTCGAAACCGTGTGGCAGACTGTG
CGCAGCCGTCTGCCGGAACTTGAAGAAACGTTCTGGAAAATCCATCCCGGCCTAAACGGCAGCAGTTACCGCCAAAAAAA
CTTTACCGAGCAATTTGCAGAGTGGAAAAAGTCCGCAGAACGCAACACGCCTCCCGGCTATTCCAAATACTTTGAAAAAT
TCGATCAAGGTGCTTTAACCAAAGGATTGAAAAAAGGGGTAATTGCCGATGAACAGGCTTTTGCCGAACTCGCCGTATTG
GCCGAATTGGGCGAACACATCCTCGTACTCGAAGAAGCAGAAGAAGAAGCCTTTATCCACTTGAAGCTGGATTTGCTCGA
CTATCTCAAACAAAATCTTGCCGAACAGAAAAAAAGCCGCAAAGAACGCAGCTTCGACGACTTGCTGACCGATGTCCATC
ATGCCCTAACCGCCACGCCCTACGGCGAAAAGCTCGCACAAACCATTTCCGAAAACTGGCGCGTGGCGCTGATTGACGAA
TTTCAGGATACCGATCCGCTGCAATACGAAATTTTCAGCACCGCCTTTATCCGACAAGGTACGCCGCTGTTTTTGGTCGG
CGATCCCAAGCAGGCCATTTACAAATTCCGCGGCGCCGATATTTATGCGTATCTGAAGGCCGCCCGAGATGCGGAACACC
ACTATACACTCGCCACCAACCACCGCAGCCATCAAGAGCTGGTCGGAAACATCAACCGGCTGTTTATGCAGAAAACCCAC
CCCTTTGTTTTAAATGATATCCGCTATCCCGAAGTGGAAGCCGCCCGTAAGGAAGGCCGTCTGAATCCGAAGCAGGCTTC
ATTCCGCGTGCGTTGGCTAATCGATGAAAACGGCGACACACCCGCACAAAGAGACCCGCTCAGACGGCTTTCCGCCCGTT
ATTGCGCCGATGAAATCGCCGATGCACTCAACCGCGCCGCCAAAGGAGAATACCGTTTGGGCGACCGTGCATTAGAGGCC
GGCGATATTGCCGTTTTGGTCAGAAAAGGCGAACAAGGCAGGCTGATTGCGCGCGAACTGAAAAAACGGAATATCCAAAG
CGTGATCCAAAGCCGCGAATCGGTTTTCGCCGCCGAAGAAACGCTGGCAATTGCCGCGTTGATCCGTTTCTGGCTGGAAC
CGCAAAAAACCGAGTTTCTGCGTTTTGTGCTAGGCAGCGTGTTGTTCCAATATACCGCAGACCAACTGTACGAACTCAAT
CAAAACGAACAGCTGCTGTCGGAGTGGACGGATGCCGCCGCCGAAGCATTGGAAATCTGGCAACAGCGCGGTTTTTATGC
CGCCATTCAGTATTTTTCCACCCGCTACCGTATCGAATCCCGTTTGCTGGCCGGAAAAAACGAACGCAGCCTGACCAATT
TCAACCAAGTGTTGGAGCTGCTTGCCGAAGAAGACGAAGAAAGCCATTCGCCGTTTTCGCTGCTGCAATGGCTGCAAAAC
GAAATCAACGCCGCCGAAAAAGGCAATCAAGACAAAGAAAAAACCCTGCGTTTGGAAAGCGATGAAGAGCTGGTCAAAAT
CGTAACCATCCATGCGTCCAAAGGCCTGCAGTATCCGCTGGTTTATTGTCCGTTTGCTTGGGAAGCGCAAAAAAACCAGC
CCGAAGGCTGGCAGATTCTGCAACGCAGCGACCAAACCGCCGAACTATGCTATGCCTCGCAATTAAGCGAAGATGACAAA
CAACAGCTTAACGAAGAAAATTTAGGCGAAGATCTAAGGCTGCTTTATGTGGCGCTGACCCGTGCCGAAGAACAGGTAAC
CGTATATGCCGCCTATTGCAACGATACCCCCAACAACAGTTTGGCATACTTACTGAACGGCAACGCAGAAACCCGACCCG
ACGAAGTGGAAGCCGCCTATTCCGCTTTGGAAAAATCCAACCGCCCGTCGCTGCTGAAACAAGATTGGCAACGCTTTCTC
GGCATACCCGAACCCGAAAGCGGCTGCGAATGGCTCGACAGCGTACCGACACCTAGCGGCTACACGCCGGATCACAACCG
CCAAACCGCCTATCACGCGACCGCGCTGCCGAAGCGTTCGTTTGAATTTATCAAACACACCAGTTTCACCGCCTTAAGCA
GTCAGACTTCCACCATTCAAGAAGAAAACCGCGAAGAGCTTCAGCCGGCCATCGACCCCGCCGAAACCGAGTTAACGGTG
AGGCCGTCTGAAATTTCCGCTGCTTGCGAAGTATCCCCCGACAGCATTCATCATTTTCCGCGCGGTACCAAAGCCGGTGT
GTGTTTACACGAAATGCTGGAACATTTGGATTTCTCCAAACCTGCAGCCGTACAGAGCGAACAAACCGCCGCCTGCCTGC
AGAAATACGGTTTTGACGCAAGCTGGCTGCCCTCAGTCGAAACCATGCTCGAGCAAACCCGTTTGAGCAAGCTGTTCGAT
AATTATGCGCTGGCCGATATCCCGCCGAAAAAACGCCTGCCCGAAATGGCGTTTACCCTGTATATGGAGCAGTTCGACTT
GGCACAACTGCGCCGGTGGTTTGAACGCTCGACCCTGCCCGGCGCCTGCCTTGCCGCCGCACAACATCTGGATTTCCAAA
CCGTTAGAGGTTTTCTCAACGGCTTTATCGATATGGTTTGCCAATATTCAGACGGCCATGTCTGCATTATCGACTACAAA
TCCAACCATCTGGGCGACAATGCCAGTGCTTATACCCGTCGGGCAATGGACGAAGCCGTGGCCGGACACCATTATTACCT
TCAGGCTTTGATTTACAGCATTGCCGTTGCCCGGCATTTCCAAGTGCGCGGCCGTCCGCTGCACGGCATTTCCGTACGCT
ATCTGTTTCTGCGCGGTTTGGACGGCACGGATAACGGCATATGGCAATGGAACATCGACACCGCCGACTTACAGGAATGG
CTGCAAGCACCGGCACAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

54.447

99.751

0.543


Multiple sequence alignment