Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   D5R51_RS17225 Genome accession   NZ_LS997868
Coordinates   637578..638747 (-) Length   389 a.a.
NCBI ID   WP_001039919.1    Uniprot ID   -
Organism   Vibrio paracholerae strain NCTC 30     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 632578..643747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS17220 (SAMEA104470976_03295) cqsS 635416..637476 (+) 2061 WP_080284867.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  D5R51_RS17225 (SAMEA104470976_03296) cqsA 637578..638747 (-) 1170 WP_001039919.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  D5R51_RS17230 (SAMEA104470976_03297) - 638944..639906 (-) 963 WP_001104012.1 TDT family transporter -
  D5R51_RS17235 (SAMEA104470976_03298) clcA 640052..641458 (-) 1407 WP_119091976.1 H(+)/Cl(-) exchange transporter ClcA -
  D5R51_RS17240 (SAMEA104470976_03299) - 641924..642913 (+) 990 WP_119091977.1 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43528.64 Da        Isoelectric Point: 6.4943

>NTDB_id=1143364 D5R51_RS17225 WP_001039919.1 637578..638747(-) (cqsA) [Vibrio paracholerae strain NCTC 30]
MNKPQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKLTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIKSADNRRQHLDRMARKLRIGLSQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQITKIIEVCSDAVNCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=1143364 D5R51_RS17225 WP_001039919.1 637578..638747(-) (cqsA) [Vibrio paracholerae strain NCTC 30]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGAACAAGATAGATCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTTGTATTGGGTAAACAAGCCAGCCCTGATGACATTATTTTGCAAAGTAATGATTATCTCGCATTGGCCA
ATCATCCGTTGATCAAAGCTCGTTTGGCGAAGTCATTACTGGAAGAACAACAAAGCTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTTTAGCTAAGCTCACAGGCTTTGATGAATGCCTATTATCTCAATC
TGGTTGGAACGCAAACGTCGGTTTATTACAAACCATCTGCCAGCCCAATACGAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTATGGGAAGGGGCACGCTACGCCAATGCTCAGGCGCATCCTTTTATGCATAATAACTGTGACCATTTACGTATG
CTGATTCAACGTCATGGTCCTGGGATCATTGTCGTAGACTCGATTTACAGCACTTTAGGTACGATTGCACCGCTGGCGGA
ACTGGTCAATATCAGCAAAGAGTTTGGCTGCGCCTTATTAGTCGATGAATCCCACTCTTTGGGTACACATGGTCCTAATG
GTGCAGGCTTACTGGCAGAATTAGGCCTTACTCGTGAAGTGCATTTTATGACCGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGTAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCAGCTATTTTTAGTTCTAC
TTTGCTGCCTTATGAAGCGGCAGGATTAGAAACCACATTAGAGATTATTAAGTCTGCGGATAATCGGCGTCAGCATTTAG
ATCGTATGGCGAGAAAATTACGCATAGGATTATCCCAGTTGGGATTAACCATTCGAAGTGAAAGCCAAATTATTGGTCTA
GAAACAGGAGATGAACGAAATACCGAAAAAGTTCGGGATTATTTAGAAAGTAATGGAGTGTTTGGCTCAGTATTCTGCCG
CCCGGCAACTTCGAAGAATAAAAACATTATTCGTTTATCACTCAATAGTGATGTGAACGATGAACAAATCACCAAAATAA
TTGAGGTTTGCTCTGATGCGGTCAACTGTGGTGATTTTTATTTCCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

98.972

100

0.99

Multiple sequence alignment