Detailed information    

insolico Bioinformatically predicted

Overview


Name   cqsS   Type   Regulator
Locus tag   D5R51_RS17220 Genome accession   NZ_LS997868
Coordinates   635416..637476 (+) Length   686 a.a.
NCBI ID   WP_080284867.1    Uniprot ID   -
Organism   Vibrio paracholerae strain NCTC 30     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 577112..635317 635416..637476 flank 99


Gene organization within MGE regions


Location: 577112..637476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS16690 - 577112..578292 (+) 1181 WP_119091239.1 IS3 family transposase -
  D5R51_RS16705 (SAMEA104470976_03230) - 579879..580331 (+) 453 WP_119091943.1 hypothetical protein -
  D5R51_RS16715 (SAMEA104470976_03231) - 580456..580755 (-) 300 WP_000802136.1 type II toxin-antitoxin system RelE/ParE family toxin -
  D5R51_RS16720 (SAMEA104470976_03232) - 580752..580994 (-) 243 WP_001107720.1 type II toxin-antitoxin system ParD family antitoxin -
  D5R51_RS19670 - 581364..581429 (+) 66 Protein_539 DUF645 family protein -
  D5R51_RS16745 (SAMEA104470976_03235) - 582101..582766 (+) 666 WP_119091946.1 site-specific DNA-methyltransferase -
  D5R51_RS16750 (SAMEA104470976_03236) - 582925..583506 (+) 582 WP_114813644.1 hypothetical protein -
  D5R51_RS16760 - 583799..583981 (+) 183 WP_000923340.1 DUF645 family protein -
  D5R51_RS16765 (SAMEA104470976_03237) - 584241..585137 (+) 897 WP_097353652.1 helix-turn-helix domain-containing protein -
  D5R51_RS16770 (SAMEA104470976_03238) - 585263..586303 (+) 1041 WP_119091947.1 IS481 family transposase -
  D5R51_RS16775 (SAMEA104470976_03239) - 586578..586949 (+) 372 WP_001008379.1 hypothetical protein -
  D5R51_RS16785 (SAMEA104470976_03240) - 587079..587396 (-) 318 WP_000077274.1 CcdB family protein -
  D5R51_RS16790 (SAMEA104470976_03241) - 587396..587641 (-) 246 WP_119091949.1 type II toxin-antitoxin system CcdA family antitoxin -
  D5R51_RS16795 (SAMEA104470976_03242) - 587839..588180 (+) 342 WP_119091923.1 SH3 domain-containing protein -
  D5R51_RS16805 - 588472..588654 (+) 183 WP_119091950.1 DUF645 family protein -
  D5R51_RS16810 (SAMEA104470976_03243) - 588914..589195 (+) 282 WP_000086649.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  D5R51_RS16815 (SAMEA104470976_03244) - 589192..589479 (+) 288 WP_119091951.1 type II toxin-antitoxin system RelE/ParE family toxin -
  D5R51_RS19450 - 589715..589765 (+) 51 Protein_552 hypothetical protein -
  D5R51_RS16825 - 589762..589995 (+) 234 WP_033930090.1 DUF3709 domain-containing protein -
  D5R51_RS19455 - 590424..590546 (+) 123 Protein_554 DUF645 family protein -
  D5R51_RS19460 - 590512..590628 (+) 117 WP_119091953.1 Tfp pilus assembly protein -
  D5R51_RS16845 (SAMEA104470976_03245) - 590882..591169 (+) 288 WP_001162670.1 type II toxin-antitoxin system RelE/ParE family toxin -
  D5R51_RS16850 (SAMEA104470976_03246) - 591180..591497 (+) 318 WP_119091955.1 HigA family addiction module antitoxin -
  D5R51_RS16855 (SAMEA104470976_03247) - 591650..592273 (+) 624 WP_000247072.1 DUF1349 domain-containing protein -
  D5R51_RS16860 (SAMEA104470976_03248) - 592435..592887 (+) 453 WP_044128081.1 N-acetyltransferase -
  D5R51_RS16870 (SAMEA104470976_03249) - 593034..593573 (+) 540 WP_084997774.1 hydrolase -
  D5R51_RS16875 (SAMEA104470976_03250) - 593771..594001 (-) 231 WP_000838533.1 PAS factor family protein -
  D5R51_RS16885 - 594381..594560 (+) 180 WP_119092153.1 DUF645 family protein -
  D5R51_RS16890 (SAMEA104470976_03251) - 594759..595082 (+) 324 WP_119091957.1 DUF4144 domain-containing protein -
  D5R51_RS16895 (SAMEA104470976_03252) - 595248..596615 (-) 1368 WP_119091958.1 Fic family protein -
  D5R51_RS19470 - 597104..597160 (+) 57 Protein_565 DUF645 family protein -
  D5R51_RS19475 - 597147..597248 (+) 102 WP_235868299.1 Tfp pilus assembly protein -
  D5R51_RS16915 (SAMEA104470976_03253) - 597488..597739 (+) 252 WP_001250180.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  D5R51_RS16920 (SAMEA104470976_03254) - 597729..598016 (+) 288 WP_000221354.1 type II toxin-antitoxin system RelE/ParE family toxin -
  D5R51_RS16930 (SAMEA104470976_03255) - 598176..598805 (+) 630 WP_114829152.1 hypothetical protein -
  D5R51_RS16935 (SAMEA104470976_03256) - 599019..599309 (+) 291 WP_119092154.1 YkgJ family cysteine cluster protein -
  D5R51_RS16940 (SAMEA104470976_03257) - 599541..599930 (+) 390 WP_162892123.1 VOC family protein -
  D5R51_RS16945 (SAMEA104470976_03258) - 600126..600449 (+) 324 WP_114780077.1 DUF3709 domain-containing protein -
  D5R51_RS16950 - 600849..601052 (+) 204 WP_259329299.1 hypothetical protein -
  D5R51_RS16960 (SAMEA104470976_03259) - 601236..601649 (+) 414 WP_002029857.1 VOC family protein -
  D5R51_RS16970 (SAMEA104470976_03260) - 601854..602567 (+) 714 WP_185835382.1 Fic family protein -
  D5R51_RS16980 - 602837..603073 (+) 237 WP_162810550.1 DUF3709 domain-containing protein -
  D5R51_RS16990 - 603407..603631 (+) 225 Protein_577 VOC family protein -
  D5R51_RS16995 - 603948..604118 (+) 171 Protein_578 DUF645 family protein -
  D5R51_RS17005 (SAMEA104470976_03261) - 604315..604584 (-) 270 WP_000277238.1 type II toxin-antitoxin system YafQ family toxin -
  D5R51_RS17010 (SAMEA104470976_03262) - 604577..604855 (-) 279 WP_001258569.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  D5R51_RS17020 - 605209..605391 (+) 183 WP_072668508.1 DUF645 family protein -
  D5R51_RS17025 - 605723..605893 (+) 171 WP_113600562.1 DUF3709 domain-containing protein -
  D5R51_RS17030 (SAMEA104470976_03263) - 606226..606642 (+) 417 WP_119091961.1 lysozyme inhibitor LprI family protein -
  D5R51_RS17040 (SAMEA104470976_03264) - 606809..607111 (+) 303 Protein_584 isochorismatase family protein -
  D5R51_RS17045 (SAMEA104470976_03265) - 607167..608208 (-) 1042 Protein_585 IS481-like element ISVvu4 family transposase -
  D5R51_RS17050 - 608317..608562 (+) 246 Protein_586 isochorismatase family protein -
  D5R51_RS17055 (SAMEA104470976_03267) - 608736..609149 (+) 414 WP_119091962.1 GNAT family N-acetyltransferase -
  D5R51_RS19500 - 609394..609444 (+) 51 Protein_588 hypothetical protein -
  D5R51_RS17065 - 609441..609674 (+) 234 WP_033930090.1 DUF3709 domain-containing protein -
  D5R51_RS17070 (SAMEA104470976_03268) - 609993..610271 (+) 279 WP_248431264.1 hypothetical protein -
  D5R51_RS17075 (SAMEA104470976_03269) - 610394..610684 (-) 291 WP_076008724.1 type II toxin-antitoxin system RelE/ParE family toxin -
  D5R51_RS17080 (SAMEA104470976_03270) - 610674..610922 (-) 249 WP_000213183.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  D5R51_RS19615 - 611279..611457 (+) 179 Protein_593 DUF645 family protein -
  D5R51_RS17100 (SAMEA104470976_03272) - 611652..612146 (+) 495 WP_119091965.1 GNAT family N-acetyltransferase -
  D5R51_RS17105 (SAMEA104470976_03273) - 612255..613295 (+) 1041 WP_057645437.1 IS481-like element ISVvu4 family transposase -
  D5R51_RS17110 (SAMEA104470976_03274) - 613319..613915 (+) 597 WP_259329301.1 hypothetical protein -
  D5R51_RS17120 - 614169..614446 (+) 278 Protein_597 DUF3709 domain-containing protein -
  D5R51_RS17125 - 614755..615021 (+) 267 WP_000589156.1 BrnT family toxin -
  D5R51_RS17130 (SAMEA104470976_03275) brnA 615008..615253 (+) 246 WP_000643598.1 type II toxin-antitoxin system BrnA family antitoxin -
  D5R51_RS17140 (SAMEA104470976_03276) - 615392..615862 (-) 471 WP_119091966.1 RES family NAD+ phosphorylase -
  D5R51_RS17145 (SAMEA104470976_03277) - 615862..616314 (-) 453 WP_119091967.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  D5R51_RS17150 (SAMEA104470976_03278) - 616421..617212 (-) 792 Protein_602 IS110 family transposase -
  D5R51_RS17155 (SAMEA104470976_03279) - 617530..618516 (-) 987 WP_001170903.1 sulfate ABC transporter substrate-binding protein -
  D5R51_RS19510 - 618926..620571 (+) 1646 Protein_604 nucleotide pyrophosphatase -
  D5R51_RS19015 - 620647..620823 (-) 177 WP_162892125.1 hypothetical protein -
  D5R51_RS17170 (SAMEA104470976_03285) nrdD 620971..623091 (+) 2121 WP_119091969.1 anaerobic ribonucleoside-triphosphate reductase -
  D5R51_RS17175 (SAMEA104470976_03286) nrdG 623096..623563 (+) 468 WP_001106209.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
  D5R51_RS17180 (SAMEA104470976_03287) - 623685..624866 (+) 1182 WP_119091970.1 amino acid aminotransferase -
  D5R51_RS17185 (SAMEA104470976_03288) - 624924..625607 (+) 684 WP_113611674.1 ATP-dependent zinc protease -
  D5R51_RS17190 (SAMEA104470976_03289) fruA 625841..627577 (-) 1737 WP_162892126.1 PTS fructose transporter subunit IIBC -
  D5R51_RS17195 (SAMEA104470976_03290) pfkB 627596..628549 (-) 954 WP_000163398.1 1-phosphofructokinase -
  D5R51_RS17200 (SAMEA104470976_03291) fruB 628560..629762 (-) 1203 WP_119091972.1 fused PTS fructose transporter subunit IIA/HPr protein -
  D5R51_RS17205 (SAMEA104470976_03292) cra 630101..631081 (+) 981 WP_119091973.1 catabolite repressor/activator -
  D5R51_RS17210 (SAMEA104470976_03293) - 631135..632274 (+) 1140 WP_119091974.1 exonuclease SbcCD subunit D -
  D5R51_RS17215 (SAMEA104470976_03294) - 632276..635317 (+) 3042 WP_119091975.1 SbcC/MukB-like Walker B domain-containing protein -
  D5R51_RS17220 (SAMEA104470976_03295) cqsS 635416..637476 (+) 2061 WP_080284867.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator

Sequence


Protein


Download         Length: 686 a.a.        Molecular weight: 78073.02 Da        Isoelectric Point: 5.5106

>NTDB_id=1143363 D5R51_RS17220 WP_080284867.1 635416..637476(+) (cqsS) [Vibrio paracholerae strain NCTC 30]
MIVSMDVIKRVYQYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQSYENLGLRCAAAVLFGGLVFRDSMPKKWQRYMPGYFL
FTIGFCLPFFFAFMMLMNDWSTIWAMSFMASIFLHILLVHDTRVMALQALFSVLMAYLAVYGLTDFHPTTLIEWQYIPIF
LFTYVFGNLCFFRNQVSHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQAAAHADYSLDAQELDLLHQILN
EADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQQSVLLEVHQPFEFFGSDTLLTYALFN
LLKNAFYYQKEHFSVRITIAQTGEDNIIRVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCTS
QQGQWTEFVLTFPRYDSDTVNEIKAELLKTKSIIYIGSNQAIVRELTQLAVEDEFGFTAISAQQAVRRQDYEFEFELILL
DLDDATAQGELLPKLEGTLSFAGGCIGYVYDPGKTYAVNINRYLRIQPISIHSILRKPKTIIERLLFEQESLSMNRNVIP
LQKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRGSEHAY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=1143363 D5R51_RS17220 WP_080284867.1 635416..637476(+) (cqsS) [Vibrio paracholerae strain NCTC 30]
GTGATAGTGAGCATGGATGTAATAAAGAGAGTGTATCAATACGCAGAACCTAATCTGTCCTTAGTCGGATGGATGGGCAT
GCTTGGCTTTCCTGCCTACTACTTCATCTGGGAATATTGGTTTCCGCAATCTTACGAAAATTTAGGGCTGCGTTGTGCGG
CAGCGGTGCTGTTCGGTGGGCTGGTGTTTCGTGATTCGATGCCTAAGAAATGGCAGCGGTATATGCCGGGCTATTTTTTA
TTCACCATAGGTTTCTGCTTACCCTTTTTCTTCGCTTTTATGATGTTAATGAATGACTGGTCGACGATTTGGGCAATGTC
GTTTATGGCGTCCATTTTCCTGCATATTCTCTTAGTGCACGATACGAGAGTGATGGCGTTACAAGCTCTTTTCTCAGTGT
TGATGGCTTATCTCGCCGTATATGGGTTGACGGATTTTCATCCTACCACTTTGATTGAATGGCAATATATACCGATTTTT
TTGTTCACTTATGTGTTTGGAAATTTGTGTTTTTTCCGTAACCAAGTCTCTCATGAAACCAAAGTGTCGATTGCTAAAAC
ATTCGGAGCAGGGATTGCCCACGAAATGCGTAATCCGCTCAGTGCGTTGAAAACGTCGATTGATGTTGTGCGGACTATGA
TCCCTAAACCGCAAGCTGCGGCACATGCGGATTATTCCTTGGATGCACAAGAGCTGGATCTGCTGCATCAAATTTTGAAT
GAAGCGGATGATGTTATTTACTCTGGCAATAATGCAATTGATTTGCTTCTTACCTCGATAGATGAAAACCGTGTATCTCC
GGCGAGCTTTAAAAAACACTCAGTAGTGGATGTAATTGAAAAAGCCGTGAAAACTTTTCCGTATAAAAACGCGGCAGATC
AGCAGTCAGTACTACTTGAAGTACATCAGCCGTTTGAGTTTTTTGGCAGTGATACTCTATTGACCTATGCGCTATTTAAC
CTTTTGAAAAATGCCTTCTATTACCAGAAAGAGCATTTCTCAGTTCGTATTACAATCGCTCAAACTGGCGAGGATAATAT
TATCCGAGTTCGTGATAATGGAGTAGGCATTGCTCCAGAGATGTTGGAAGACATTTTTCGTGATTTCTATACCTTCGGTA
AAAATGGCAGCTATGGGCTAGGATTACCGTTCTGTCGTAAAGTGATGACGGCATTTGGAGGGACGATTCGCTGCACGTCT
CAACAAGGTCAATGGACCGAATTTGTATTAACCTTCCCCCGTTACGATTCCGATACGGTCAATGAGATAAAAGCAGAGCT
GCTGAAAACCAAATCGATCATTTACATCGGATCAAATCAAGCCATCGTTCGAGAGTTAACTCAGCTAGCGGTGGAAGATG
AGTTTGGCTTTACCGCTATTTCTGCACAGCAAGCGGTGAGACGCCAAGACTATGAGTTTGAATTCGAACTTATTCTGCTT
GATCTCGATGACGCTACAGCGCAGGGAGAGTTGCTGCCCAAACTCGAAGGTACATTGAGTTTTGCAGGAGGTTGTATCGG
CTATGTGTATGACCCAGGTAAAACGTATGCGGTAAACATCAATCGTTATCTGCGCATCCAACCGATCAGTATTCACTCTA
TTCTCAGAAAGCCTAAGACAATCATCGAGCGCTTGTTGTTTGAACAAGAGTCTTTATCGATGAATCGTAACGTGATCCCT
TTGCAAAAGAGTCGGCATGAACGGCGCATTTTGGTGGTTGACGATAATCAATCGATCCGAACTTTTACGGCCATTTTGCT
TGAACAACAAGGCTATGAAGTGGTGCAAGCCAACGATGGGAGTGAAGTGCTCAAGCATATGGAGAGCCAAAACATCGATT
TAGTGTTGATGGACATTGAAATGCCCAATGTTGGTGGATTGGAAGCGACGCGTTTAATTCGTGGCTCTGAACATGCTTAC
AAAAATATTCCGATCATCGGTTATACCGGTGATAACAGCCCCAAAACTTTGGCTCTGGTACAAACCTCTGGCATGAATGA
TTTTATTGTCAAGCCAGCGGACCGTGATGTATTGCTAAATAAAGTGGCAGCTTGGGTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

96.356

100

0.964


Multiple sequence alignment