Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   D5R51_RS10730 Genome accession   NZ_LS997867
Coordinates   2340732..2341343 (+) Length   203 a.a.
NCBI ID   WP_119091499.1    Uniprot ID   -
Organism   Vibrio paracholerae strain NCTC 30     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2335732..2346343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS10710 (SAMEA104470976_02137) - 2336073..2336990 (-) 918 WP_113600608.1 ABC transporter ATP-binding protein -
  D5R51_RS10715 (SAMEA104470976_02138) - 2337365..2339011 (-) 1647 WP_119091498.1 SulP family inorganic anion transporter -
  D5R51_RS10720 (SAMEA104470976_02139) can 2339159..2339827 (+) 669 WP_001114112.1 carbonate dehydratase -
  D5R51_RS10725 (SAMEA104470976_02140) hpt 2339903..2340436 (-) 534 WP_000683351.1 hypoxanthine phosphoribosyltransferase -
  D5R51_RS10730 (SAMEA104470976_02141) hapR 2340732..2341343 (+) 612 WP_119091499.1 quorum-sensing master transcriptional regulator HapR Regulator
  D5R51_RS10740 (SAMEA104470976_02142) rsmI 2341553..2342419 (-) 867 WP_029627917.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  D5R51_RS10745 (SAMEA104470976_02143) - 2342489..2344294 (+) 1806 WP_119091501.1 penicillin-binding protein activator -
  D5R51_RS10750 (SAMEA104470976_02144) - 2344281..2344649 (+) 369 WP_032471957.1 YraN family protein -
  D5R51_RS10755 (SAMEA104470976_02145) - 2344653..2345243 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  D5R51_RS10760 (SAMEA104470976_02146) - 2345246..2345815 (+) 570 WP_000789633.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23677.41 Da        Isoelectric Point: 6.3365

>NTDB_id=1143349 D5R51_RS10730 WP_119091499.1 2340732..2341343(+) (hapR) [Vibrio paracholerae strain NCTC 30]
MDASIEKRPRTLLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1143349 D5R51_RS10730 WP_119091499.1 2340732..2341343(+) (hapR) [Vibrio paracholerae strain NCTC 30]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCTGCTGTCGCCTCAAAAACGTAAACTACAACTGATGGAAATCGCGTT
GGAAGTATTTGCTAAACGTGGCATTGGTCGCGGTGGTCACGCTGATATTGCCGAGATTGCGCAAGTCTCCGTAGCAACCG
TGTTCAACTACTTCCCAACTCGCGAAGATCTCGTCGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAACTTCTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAACCAACCTACAAACCCTGTGCAAAGAGATGGTGAAATTGGCGATGAC
TGATTGTCACTGGCTCAAAGTCTGGTTTGAGTGGAGTGCTTCAACCCGTGACGAAGTTTGGCCACTGTTTGTATCCACCA
ACCGTACGAACCAACTGCTGATCAGAAATATGTTTATGAAAGCGATGGAGCGTGGCGAATTGTGTGAGAAACACGATGTC
GACAACATGGCTAGCCTATTCCACGGCATCTTCTACTCCATCTTCTTACAAGTGAACCGTTTAGGTGAACAAGAAGCGGT
GTATAAGCTGGTCGATAGCTACCTCAATATGCTGTGTATCTATAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

99.015

100

0.99
  hapR Vibrio cholerae strain A1552

99.015

100

0.99
  opaR Vibrio parahaemolyticus RIMD 2210633

72.222

97.537

0.704

Multiple sequence alignment