Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   D5R51_RS03690 Genome accession   NZ_LS997867
Coordinates   766305..769649 (+) Length   1114 a.a.
NCBI ID   WP_162891900.1    Uniprot ID   -
Organism   Vibrio paracholerae strain NCTC 30     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 761305..774649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS03665 (SAMEA104470976_00729) sucC 761445..762611 (+) 1167 WP_001048578.1 ADP-forming succinate--CoA ligase subunit beta -
  D5R51_RS03670 (SAMEA104470976_00730) sucD 762611..763483 (+) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  D5R51_RS03675 (SAMEA104470976_00731) znuB 763571..764353 (-) 783 WP_000571529.1 zinc ABC transporter permease subunit ZnuB -
  D5R51_RS03680 (SAMEA104470976_00732) znuC 764346..765134 (-) 789 WP_000996142.1 zinc ABC transporter ATP-binding protein ZnuC -
  D5R51_RS03685 (SAMEA104470976_00733) znuA 765218..766102 (+) 885 WP_162891899.1 zinc ABC transporter substrate-binding protein ZnuA -
  D5R51_RS03690 (SAMEA104470976_00734) tfoS 766305..769649 (+) 3345 WP_162891900.1 AraC family transcriptional regulator Regulator
  D5R51_RS03695 (SAMEA104470976_00736) - 770424..770654 (+) 231 WP_119090926.1 ferrous iron transport protein A -
  D5R51_RS03700 (SAMEA104470976_00737) feoB 770651..772927 (+) 2277 WP_119090927.1 Fe(2+) transporter permease subunit FeoB -
  D5R51_RS03705 (SAMEA104470976_00738) - 772924..773154 (+) 231 WP_000602537.1 FeoC-like transcriptional regulator -
  D5R51_RS03710 (SAMEA104470976_00739) - 773413..773841 (-) 429 WP_162891901.1 HIT domain-containing protein -

Sequence

Protein


Download         Length: 1114 a.a.        Molecular weight: 126439.00 Da        Isoelectric Point: 6.8702

>NTDB_id=1143337 D5R51_RS03690 WP_162891900.1 766305..769649(+) (tfoS) [Vibrio paracholerae strain NCTC 30]
MFRIFLYGCLLNILIPSLVLALDKSVSIFYPLPIQEQGKVIVAHNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLP
QLSTHIVYANSAFWAFEQHELFRTYPGGERELMLSLTPGTQIIQMGASNGMIWMVDGGNFYSYEIRSGRVESLSLHELYQ
LNSASKVVINDAQFLVSKWALATNVGVYLSDEQGFSHVKKSGKNFIQKLYFSHKRRELLVGSKRGALVIDIEDKRPPLDR
IGSSHILSIAETEKEYWIGTEDGLFVYSFITGKIVQLESNHQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQ
FTRYPGQALSNDGSKTPIGKMVPLNSDGDYLAITAQGLYNFNFSGELRKHLIYPGKVNDFVIDQEHIWIATEKGLVRYNL
SRRSIDTPNLPLPLLQTAIQHLSLDNDGNLWGTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSQITLLAAVRDGIVIGTE
HGAYSLFEKQIRFDFASHRYGEIVQVVEDTAGHIWVVGSYGVFQWRKNQPESVTVELIEENIQPLCIAESKQGMWLISTK
GISYYRNQELTKHFGAPYGLISNEFLPASCTVGEEQDTSSLIIGSQFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKL
LGYRMSEPVKIAYGDSISFQFGALPSSRSQSLEYKLNDEQQWQRFDGALLNFDQLLPGKYRLKVRSANPMQRYRTEALFD
FEVSEPWYMTSMALVGYVLSLLGLLALALWWRTRMILAANRKLKAQVELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILG
SVLNNIDASLRHLSSYAKVRSWSEFEAPFNKVKQELAQLHFMHRGDEDESKYHDLHLLIESALKSWHEEYSKALIKLTYS
GEPRFVEVRQFNLDVLFNAVLTDAIKRLYKHQELTIQLEVRNAQAVIVFSDFGAPIQNINKTMVTLSGSSYPLEELVTRS
GGELHVLALKERNVIELAWPLATLPELEAVHKQEESEPGAKVSIDEVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVS
ERSLQRRFKAATGKTFKESLNEVRLEKACQSLLSGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQEN

Nucleotide


Download         Length: 3345 bp        

>NTDB_id=1143337 D5R51_RS03690 WP_162891900.1 766305..769649(+) (tfoS) [Vibrio paracholerae strain NCTC 30]
GTGTTTCGCATATTTTTGTATGGCTGCTTGCTCAATATCCTGATCCCATCTTTGGTATTGGCATTAGATAAATCTGTATC
TATTTTCTATCCCCTACCGATTCAAGAGCAGGGGAAGGTGATCGTTGCGCATAACCTTTACCTTGGCAGTGATGGTGGTA
TTTGGGTGCATGATGTTCACGGTAAAGTGATGTACTTTGATGGGCAGAATGTTTTGCCTCGACGTGGCTCTGTTCTACCA
CAATTGTCCACTCATATCGTTTATGCGAACAGTGCATTTTGGGCTTTTGAGCAACACGAGTTGTTCAGAACCTATCCTGG
GGGAGAAAGAGAGCTGATGTTGAGCTTAACTCCGGGAACGCAGATTATTCAGATGGGGGCCTCTAACGGCATGATCTGGA
TGGTCGATGGGGGAAACTTTTACAGTTATGAGATCCGAAGTGGTCGCGTCGAATCGCTTTCTTTACATGAACTTTATCAG
CTCAATAGTGCCAGTAAGGTCGTGATTAACGATGCACAGTTTTTAGTCTCGAAATGGGCTTTAGCGACCAATGTCGGGGT
GTATTTATCTGACGAACAAGGTTTTTCTCATGTTAAAAAATCAGGTAAAAACTTTATCCAAAAACTCTATTTTTCCCATA
AACGTCGAGAGCTGTTAGTTGGGTCTAAACGTGGTGCGTTAGTCATTGATATTGAAGATAAACGCCCACCACTGGATAGA
ATTGGCTCCTCTCATATCCTCTCTATTGCGGAAACCGAGAAAGAGTACTGGATCGGTACAGAAGATGGACTCTTTGTTTA
CTCTTTTATCACCGGAAAAATCGTGCAACTTGAAAGTAACCATCAAGATGGCTATGCCTTACTGGGCAAGAAAATCTACG
CCATGGTGAATGACTTTCAAGGTGGGATGTGGATAGGAACTGACAAGGGGATTTTTTACTACTCCCTGTTTGGTCAGCAG
TTTACTCGGTATCCAGGACAAGCGTTATCTAATGACGGTAGTAAAACGCCGATCGGTAAAATGGTACCACTCAACTCCGA
CGGAGATTATTTGGCGATAACTGCACAAGGTCTGTATAACTTCAATTTTTCGGGTGAGTTACGTAAACATCTCATTTATC
CCGGTAAAGTGAATGATTTTGTGATTGACCAAGAGCATATTTGGATCGCGACAGAGAAAGGTCTGGTTCGTTACAATCTC
AGTCGTCGTAGTATTGATACGCCGAATTTACCGCTCCCTTTGCTACAAACGGCTATTCAACATCTTAGCTTAGATAATGA
TGGTAACTTATGGGGGACAAGTGATTACCAAATTTGGTCATACTCACTCTCTGAAAAAAACTATCGAGATTATGGTTCTG
AATGGATGGTGAAAGCTTTTTCTCCATCACAGATTACTCTGCTTGCCGCAGTACGAGACGGCATAGTGATCGGGACGGAA
CATGGCGCGTATTCCCTGTTTGAAAAACAGATCCGCTTTGATTTTGCCAGCCATCGTTATGGTGAGATAGTACAAGTTGT
TGAAGATACTGCAGGCCATATTTGGGTTGTTGGCTCTTATGGGGTCTTTCAGTGGCGTAAAAATCAGCCCGAATCCGTCA
CCGTCGAGTTAATCGAAGAAAATATCCAACCTTTGTGTATTGCCGAGTCCAAGCAGGGGATGTGGCTCATCTCTACAAAA
GGGATCAGCTATTACCGTAATCAAGAGCTTACGAAACATTTTGGGGCTCCTTATGGTTTGATCAGTAATGAATTCTTGCC
GGCATCGTGTACGGTAGGTGAGGAGCAAGATACCTCATCGTTGATCATCGGATCGCAATTTGGTGTGGTGAAAACCAATA
CAGAAGAATTAGCCGTGTCTAATTTGCCTAATATTCAGGTGACGTTTAGCCAAGTCAGCGTAAATCATACGACTAAGCTT
TTGGGATATCGTATGTCCGAGCCAGTGAAAATTGCTTATGGTGACTCGATCAGTTTTCAGTTTGGTGCTTTACCATCCTC
ACGTAGTCAGTCTTTAGAATACAAACTTAACGATGAACAACAGTGGCAGCGTTTTGATGGGGCGCTGCTCAATTTTGATC
AACTTTTACCAGGTAAATATCGTTTGAAAGTCCGCAGTGCGAACCCAATGCAGCGATACCGAACTGAAGCCCTGTTTGAT
TTTGAAGTTTCAGAGCCTTGGTATATGACTTCCATGGCACTTGTCGGATATGTCCTTAGCCTGCTTGGTTTGTTAGCACT
CGCTTTATGGTGGCGAACACGAATGATATTGGCAGCTAACCGCAAACTTAAAGCGCAAGTGGAGCTCAAAACTAGCCAGT
TACGTCATCAAAGTAAAATTGTACTGAGCAATAACCACCAACTTCGAAAGCAACTGCAGCTCCACCATACAATTCTTGGT
AGCGTGTTAAATAATATTGATGCCTCATTGCGGCACTTATCGTCCTACGCCAAAGTACGTTCATGGAGTGAATTCGAAGC
ACCTTTCAACAAAGTGAAGCAAGAGTTGGCTCAACTGCATTTTATGCATCGCGGCGATGAAGATGAAAGCAAATATCATG
ATTTACATCTTTTGATTGAATCTGCGTTGAAGAGTTGGCACGAAGAGTACAGCAAAGCCTTGATTAAACTGACTTACAGC
GGTGAGCCTCGCTTTGTTGAAGTCCGACAATTCAATCTTGATGTGCTATTTAATGCAGTGTTAACGGATGCGATCAAACG
TTTGTATAAGCATCAAGAATTAACCATACAACTTGAAGTGAGAAATGCGCAGGCGGTTATCGTATTTTCGGATTTTGGCG
CGCCAATCCAAAACATAAACAAAACTATGGTGACTTTATCTGGAAGTAGTTATCCGCTTGAAGAGTTAGTTACTCGCAGC
GGTGGTGAATTGCATGTACTCGCATTGAAAGAGCGCAATGTTATTGAGTTAGCTTGGCCATTGGCAACCTTACCCGAGTT
AGAGGCCGTCCATAAACAAGAAGAAAGCGAACCGGGGGCTAAGGTTAGCATTGATGAGGTGGAGAAAGAGTGGCTAAGTA
AAGTCGAGAAACTGATAGAGCTGCATTATAGCGATCCCAATTTCACCACATCTACAGCAGCGCAGGCGCTTTATGTCTCT
GAACGCAGTTTACAGCGTCGCTTTAAAGCCGCGACAGGAAAAACTTTCAAAGAGTCGTTAAATGAAGTTCGCTTAGAAAA
AGCGTGTCAAAGCTTATTGAGTGGGGCGAAAATCGCGCAAGTTGCCTTTGATTGCGGATTTAATGATCCCTCTTATTTCA
GTCAGCGTTTCAAACATCATTTTGGATTATCACCAAGCCAATTCATCGAAGATCAAGAAAACTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1034-1109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

95.063

100

0.951

Multiple sequence alignment