Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DYY97_RS14510 Genome accession   NZ_LS991421
Coordinates   2973898..2974491 (+) Length   197 a.a.
NCBI ID   WP_010490295.1    Uniprot ID   A0AAN1C5F0
Organism   Lacticaseibacillus zeae isolate CECT 9104     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2968898..2979491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY97_RS14495 - 2971502..2972872 (+) 1371 WP_231956475.1 MFS transporter -
  DYY97_RS14500 ssb 2973014..2973445 (+) 432 WP_010490299.1 single-stranded DNA-binding protein -
  DYY97_RS14505 rpsF 2973572..2973868 (+) 297 WP_010490297.1 30S ribosomal protein S6 -
  DYY97_RS14510 ssb 2973898..2974491 (+) 594 WP_010490295.1 single-stranded DNA-binding protein Machinery gene
  DYY97_RS14515 rpsR 2974581..2974817 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  DYY97_RS14520 - 2974900..2975406 (-) 507 WP_010490256.1 type 1 glutamine amidotransferase domain-containing protein -
  DYY97_RS14525 - 2975764..2977242 (+) 1479 WP_070651037.1 cytochrome ubiquinol oxidase subunit I -
  DYY97_RS14530 cydB 2977235..2978254 (+) 1020 WP_070651035.1 cytochrome d ubiquinol oxidase subunit II -
  DYY97_RS14540 - 2978495..2978689 (+) 195 WP_010490250.1 hypothetical protein -
  DYY97_RS14545 - 2979050..2979268 (+) 219 WP_070651034.1 Blp family class II bacteriocin -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21090.81 Da        Isoelectric Point: 4.9056

>NTDB_id=1143095 DYY97_RS14510 WP_010490295.1 2973898..2974491(+) (ssb) [Lacticaseibacillus zeae isolate CECT 9104]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGIEGHIQTR
SYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQQPQNPPSFGSQSAPNNAPSSNPG
QNPAAGQSQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1143095 DYY97_RS14510 WP_010490295.1 2973898..2974491(+) (ssb) [Lacticaseibacillus zeae isolate CECT 9104]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTACGCTATACGCAAAGCGGTACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGTGAACGGGAAACCGACTTTATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCAAACTTCACCAAGAAAGGCTCACTGGTCGGGATTGAAGGACACATTCAGACGCGT
TCTTACGATAATGCGCAAGGGCAGAAAGTCTATGTGACCGAAGTCGTCGTTGAGAACTTTGCATTGCTGGAATCACGGGC
AACGACACAACAACGACCGTCTGAACCTGCGAATCCCGCTGGCCAAGGCAACCAGAATTACGGCGGTGGGCAGCAGTTTG
GTAATAACCAGCAGCCGCAAAACCCACCTAGCTTTGGTTCCCAAAGCGCCCCGAACAATGCACCATCATCGAATCCGGGT
CAAAACCCGGCAGCAGGTCAAAGCCAAGGCAACAACGGCAATGCTGCTAATCCCGATCCCTTTGCCAATAATGGTAAACC
GATCGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.406

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.492

Multiple sequence alignment