Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | STN4L_RS08145 | Genome accession | NZ_LS974444 |
| Coordinates | 1528824..1529780 (+) | Length | 318 a.a. |
| NCBI ID | WP_011681684.1 | Uniprot ID | - |
| Organism | Streptococcus thermophilus strain N4L | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1523824..1534780
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STN4L_RS08105 (STN4L_01902) | - | 1524721..1525083 (+) | 363 | WP_014608746.1 | DUF1033 family protein | - |
| STN4L_RS08110 (STN4L_01903) | comGA/cglA/cilD | 1525164..1526105 (+) | 942 | WP_014608745.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| STN4L_RS08115 (STN4L_01904) | comYB | 1525987..1527087 (+) | 1101 | WP_120764773.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| STN4L_RS08120 (STN4L_01905) | comYC | 1527084..1527410 (+) | 327 | WP_002946126.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| STN4L_RS08125 (STN4L_01906) | comYD | 1527370..1527798 (+) | 429 | WP_011226626.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| STN4L_RS08130 (STN4L_01907) | comGE | 1527770..1528063 (+) | 294 | WP_011226625.1 | competence type IV pilus minor pilin ComGE | - |
| STN4L_RS08135 (STN4L_01908) | comYF | 1528047..1528484 (+) | 438 | WP_011681686.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| STN4L_RS08140 (STN4L_01909) | comGG | 1528462..1528779 (+) | 318 | WP_011681685.1 | competence type IV pilus minor pilin ComGG | - |
| STN4L_RS08145 (STN4L_01910) | comYH | 1528824..1529780 (+) | 957 | WP_011681684.1 | class I SAM-dependent methyltransferase | Machinery gene |
| STN4L_RS08150 (STN4L_01911) | - | 1529836..1531029 (+) | 1194 | WP_014608740.1 | acetate kinase | - |
| STN4L_RS08155 | - | 1531278..1531476 (+) | 199 | Protein_1510 | helix-turn-helix transcriptional regulator | - |
| STN4L_RS10620 (STN4L_01913) | - | 1531488..1531763 (+) | 276 | WP_011681681.1 | hypothetical protein | - |
| STN4L_RS10625 (STN4L_01914) | - | 1531807..1532145 (+) | 339 | WP_224103197.1 | CPBP family intramembrane glutamic endopeptidase | - |
| STN4L_RS08170 (STN4L_01915) | - | 1532219..1532662 (+) | 444 | WP_113870473.1 | CAAX protease | - |
| STN4L_RS08175 (STN4L_01916) | - | 1532759..1533421 (+) | 663 | WP_011681679.1 | CPBP family intramembrane glutamic endopeptidase | - |
| STN4L_RS08180 (STN4L_01917) | proC | 1533451..1534221 (-) | 771 | WP_011226616.1 | pyrroline-5-carboxylate reductase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35843.02 Da Isoelectric Point: 4.7891
>NTDB_id=1143053 STN4L_RS08145 WP_011681684.1 1528824..1529780(+) (comYH) [Streptococcus thermophilus strain N4L]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF
Nucleotide
Download Length: 957 bp
>NTDB_id=1143053 STN4L_RS08145 WP_011681684.1 1528824..1529780(+) (comYH) [Streptococcus thermophilus strain N4L]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
68.889 |
99.057 |
0.682 |
| comYH | Streptococcus mutans UA140 |
68.889 |
99.057 |
0.682 |