Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   R615_RS03280 Genome accession   NZ_CP006829
Coordinates   715419..716780 (-) Length   453 a.a.
NCBI ID   WP_025264808.1    Uniprot ID   -
Organism   Thalassolituus oleivorans R6-15     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 710419..721780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R615_RS03250 (R615_03320) - 712189..712713 (-) 525 WP_025264802.1 PilX N-terminal domain-containing pilus assembly protein -
  R615_RS03255 (R615_03325) - 712743..713546 (-) 804 WP_025264803.1 PilW family protein -
  R615_RS17260 (R615_03330) pilV 713543..714103 (-) 561 WP_025264804.1 type IV pilus modification protein PilV -
  R615_RS17265 (R615_03335) - 714103..714582 (-) 480 WP_025264805.1 GspH/FimT family protein -
  R615_RS03270 (R615_03340) - 714772..715020 (-) 249 WP_081758254.1 hypothetical protein -
  R615_RS03275 (R615_03345) - 715064..715336 (-) 273 WP_197019479.1 Tfp pilus assembly protein FimT/FimU -
  R615_RS03280 (R615_03350) pilR 715419..716780 (-) 1362 WP_025264808.1 sigma-54-dependent transcriptional regulator Regulator
  R615_RS03285 (R615_03355) - 716939..718456 (-) 1518 WP_051052421.1 sensor histidine kinase -
  R615_RS03290 (R615_03360) - 718542..720164 (+) 1623 WP_025264810.1 NAD+ synthase -
  R615_RS03295 (R615_03365) - 720248..720454 (-) 207 WP_025264811.1 hypothetical protein -
  R615_RS03305 (R615_03375) - 720613..721434 (-) 822 WP_015487970.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50537.82 Da        Isoelectric Point: 4.9395

>NTDB_id=114302 R615_RS03280 WP_025264808.1 715419..716780(-) (pilR) [Thalassolituus oleivorans R6-15]
MQAVHTALIVDDEPDIRRLIALTLERMGLVCYQAENVSEALTSLEERQYHFCITDMKLPDGDGLELTQLCNRKYPDMPIA
MITAYGNMDLAVNALKSGAFDFVAKPIDTERLRQLVKAALQLTRVPTTGVVPATELLGSTPCMLALKDKIRKVARTQAPV
FVYGESGTGKELVAQLIHCQSARADKPFIAVNCGAIPTELMESEFFGHTKGSFTGATSNKNGFFKAADGGTLFLDEIAEL
PLDLQAKLLRVVQEKTVRSVGSENEEHIDVRIITASHDDLATMVSNHQFRQDLYFRLNVIQLDVPRLSERKDDIEELTHH
FITKYANEWSMPSTKLSEEALAALLEYSFPGNVRELENILQRAFTMMEGDIIRLDDLYFPANIAAELDSATDDAPKEHAP
IATNNLEGYLENIEKRAIEEALLATRWNKTAAAEKLGISFRALRYRCKKLGID

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=114302 R615_RS03280 WP_025264808.1 715419..716780(-) (pilR) [Thalassolituus oleivorans R6-15]
ATGCAAGCTGTACACACAGCACTCATCGTCGATGATGAACCCGATATTCGTCGTTTAATTGCGCTCACACTCGAACGTAT
GGGCCTAGTCTGCTATCAAGCAGAAAACGTAAGCGAAGCGCTAACCTCGCTAGAGGAGCGGCAATATCACTTCTGCATAA
CCGATATGAAACTCCCCGATGGTGATGGTCTGGAACTTACCCAGCTGTGCAATCGCAAATATCCCGACATGCCCATTGCT
ATGATTACGGCCTACGGCAATATGGATCTCGCCGTCAACGCCCTCAAATCAGGCGCATTCGACTTTGTCGCTAAGCCAAT
TGATACCGAACGTCTGCGTCAGCTAGTAAAAGCAGCACTGCAATTAACACGAGTACCAACGACAGGCGTTGTTCCAGCCA
CGGAACTATTGGGTTCGACCCCATGCATGCTGGCGCTAAAAGATAAAATTCGAAAAGTTGCTCGCACCCAAGCACCGGTA
TTTGTTTATGGTGAGTCAGGCACAGGAAAAGAACTTGTCGCACAATTGATTCACTGCCAAAGCGCCCGCGCGGATAAGCC
TTTTATCGCCGTTAACTGCGGTGCCATCCCAACCGAATTAATGGAAAGCGAGTTTTTTGGGCATACAAAAGGAAGCTTCA
CTGGAGCAACTAGCAATAAGAATGGTTTTTTTAAAGCTGCCGACGGCGGTACATTATTCCTAGATGAAATTGCCGAACTG
CCCTTGGATTTACAGGCTAAATTACTCCGAGTTGTGCAGGAAAAGACGGTTCGCAGCGTCGGTTCGGAAAATGAAGAACA
TATTGATGTTCGCATCATAACGGCCAGTCATGACGATCTTGCCACTATGGTGAGCAACCACCAATTTCGCCAAGACTTAT
ATTTCCGCCTTAATGTTATTCAACTAGACGTCCCCCGCCTATCCGAGCGTAAAGACGATATTGAAGAATTAACCCACCAC
TTTATTACCAAGTACGCCAACGAGTGGAGCATGCCCAGTACGAAGCTGAGCGAAGAAGCGCTGGCCGCATTGTTGGAATA
TTCGTTTCCCGGCAACGTACGCGAACTAGAAAACATCTTGCAGCGTGCCTTCACCATGATGGAAGGCGATATTATTCGCT
TAGATGATTTGTATTTTCCCGCAAATATCGCGGCCGAACTGGATTCTGCTACCGACGACGCACCTAAAGAGCACGCACCC
ATTGCGACCAACAACCTTGAAGGTTACCTCGAAAACATTGAAAAACGCGCGATAGAAGAAGCTCTCCTAGCCACACGCTG
GAATAAAACGGCAGCGGCAGAAAAACTTGGTATTAGCTTCCGAGCGCTGCGCTATCGTTGTAAAAAACTCGGAATCGATT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(410-450)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

54

99.338

0.536
  pilR Acinetobacter baumannii strain A118

50.655

100

0.512

Multiple sequence alignment