Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STN4L_RS00440 Genome accession   NZ_LS974444
Coordinates   86760..88253 (+) Length   497 a.a.
NCBI ID   WP_014608541.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain N4L     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 81760..93253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STN4L_RS00430 (STN4L_00101) - 83126..84375 (-) 1250 Protein_83 ISL3 family transposase -
  STN4L_RS00435 (STN4L_00102) amiA 84731..86698 (+) 1968 WP_014621802.1 peptide ABC transporter substrate-binding protein Regulator
  STN4L_RS00440 (STN4L_00103) amiC 86760..88253 (+) 1494 WP_014608541.1 ABC transporter permease Regulator
  STN4L_RS00445 (STN4L_00104) amiD 88253..89179 (+) 927 WP_113870320.1 oligopeptide ABC transporter permease OppC Regulator
  STN4L_RS00450 (STN4L_00105) amiE 89189..90274 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STN4L_RS00455 (STN4L_00106) amiF 90267..91196 (+) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  STN4L_RS00460 (STN4L_00107) - 91246..92031 (-) 786 WP_011681414.1 hypothetical protein -
  STN4L_RS00465 (STN4L_00108) - 92043..92741 (-) 699 WP_113870321.1 ABC transporter ATP-binding protein -
  STN4L_RS00470 (STN4L_00109) - 92746..93123 (-) 378 WP_011681413.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55649.53 Da        Isoelectric Point: 10.0972

>NTDB_id=1143009 STN4L_RS00440 WP_014608541.1 86760..88253(+) (amiC) [Streptococcus thermophilus strain N4L]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1143009 STN4L_RS00440 WP_014608541.1 86760..88253(+) (amiC) [Streptococcus thermophilus strain N4L]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

99.799

100

0.998
  amiC Streptococcus thermophilus LMG 18311

99.396

100

0.994
  amiC Streptococcus salivarius strain HSISS4

97.183

100

0.972

Multiple sequence alignment